miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18601 5' -54.3 NC_004682.1 + 11809 0.66 0.767689
Target:  5'- cGgcGUCGuggaCCGGCGAGGcCgAGCGCa -3'
miRNA:   3'- uCaaCAGUg---GGCCGCUCCaG-UUGUGg -5'
18601 5' -54.3 NC_004682.1 + 8285 0.66 0.767689
Target:  5'- gGGgagGUC-CCCcGCGAGGacgUgGACGCCa -3'
miRNA:   3'- -UCaa-CAGuGGGcCGCUCC---AgUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 40721 0.66 0.761537
Target:  5'- gGGUUGUCcggguuaccuccaCCGGaCG-GGUCggUACCg -3'
miRNA:   3'- -UCAACAGug-----------GGCC-GCuCCAGuuGUGG- -5'
18601 5' -54.3 NC_004682.1 + 13431 0.66 0.746998
Target:  5'- aGGUcGUCA-CCGaCGAGGacggCAACACCc -3'
miRNA:   3'- -UCAaCAGUgGGCcGCUCCa---GUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 50754 0.66 0.746998
Target:  5'- ---aGUCGCCC-GCGAGGgCGGCucugaGCCu -3'
miRNA:   3'- ucaaCAGUGGGcCGCUCCaGUUG-----UGG- -5'
18601 5' -54.3 NC_004682.1 + 43422 0.67 0.715104
Target:  5'- uAGUaGUC-CCCGaucuGCGGGGgcUCGAUGCCg -3'
miRNA:   3'- -UCAaCAGuGGGC----CGCUCC--AGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 13921 0.67 0.682463
Target:  5'- gGGUgaccGUCACCCgaGGCGAuGUCGACucguucaucaACCu -3'
miRNA:   3'- -UCAa---CAGUGGG--CCGCUcCAGUUG----------UGG- -5'
18601 5' -54.3 NC_004682.1 + 31957 0.67 0.67147
Target:  5'- cGUUGUgGCCCuGGCGAaGUCGuaggGCAUa -3'
miRNA:   3'- uCAACAgUGGG-CCGCUcCAGU----UGUGg -5'
18601 5' -54.3 NC_004682.1 + 50199 0.68 0.66044
Target:  5'- ---gGUCGCCUgGGUGAGG-CAACcggACCa -3'
miRNA:   3'- ucaaCAGUGGG-CCGCUCCaGUUG---UGG- -5'
18601 5' -54.3 NC_004682.1 + 23616 0.68 0.66044
Target:  5'- --aUGUCGCuUCGGCGGuGGccaagaucaUCGACACCc -3'
miRNA:   3'- ucaACAGUG-GGCCGCU-CC---------AGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 29133 0.68 0.63831
Target:  5'- --aUGcCGCCCagaGGCggGAGGUCGaugGCACCa -3'
miRNA:   3'- ucaACaGUGGG---CCG--CUCCAGU---UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 2661 0.68 0.627231
Target:  5'- cAGaUGcUCGCCCGGUGuGGcggCAGCgACCu -3'
miRNA:   3'- -UCaAC-AGUGGGCCGCuCCa--GUUG-UGG- -5'
18601 5' -54.3 NC_004682.1 + 4711 0.68 0.627231
Target:  5'- --cUGUCGCUCGGCGcuGcCGACGCg -3'
miRNA:   3'- ucaACAGUGGGCCGCucCaGUUGUGg -5'
18601 5' -54.3 NC_004682.1 + 48153 0.68 0.616157
Target:  5'- --aUGUCAggccCCCaGGCaGAGGUCGcugccgccACACCg -3'
miRNA:   3'- ucaACAGU----GGG-CCG-CUCCAGU--------UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 7742 0.69 0.572094
Target:  5'- cGGUgcccGUCGCCUGGCGAucugCAACGCg -3'
miRNA:   3'- -UCAa---CAGUGGGCCGCUcca-GUUGUGg -5'
18601 5' -54.3 NC_004682.1 + 37858 0.69 0.561182
Target:  5'- cGUUGaUCGgCUGGcCGAGGUaccccgagaaCAGCGCCg -3'
miRNA:   3'- uCAAC-AGUgGGCC-GCUCCA----------GUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 41292 0.69 0.561182
Target:  5'- ---cGUCuggCCGGUcucGGGGUCGACGCCc -3'
miRNA:   3'- ucaaCAGug-GGCCG---CUCCAGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 3709 0.7 0.539537
Target:  5'- gAGUcGUCGCUgaCGGCGAauacGGUCGcgacuACGCCg -3'
miRNA:   3'- -UCAaCAGUGG--GCCGCU----CCAGU-----UGUGG- -5'
18601 5' -54.3 NC_004682.1 + 745 0.7 0.539537
Target:  5'- ---aGUCAUCCGcUGAGGgCAACGCCc -3'
miRNA:   3'- ucaaCAGUGGGCcGCUCCaGUUGUGG- -5'
18601 5' -54.3 NC_004682.1 + 25201 0.7 0.539537
Target:  5'- ---cGUCcaAgCUGGCGAGGcugUCGGCACCg -3'
miRNA:   3'- ucaaCAG--UgGGCCGCUCC---AGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.