miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18617 3' -53.4 NC_004682.1 + 24393 0.66 0.805456
Target:  5'- -aUCGGCA-CgACGGugcuggacgcugaGGGCAACC-CGa -3'
miRNA:   3'- caAGCCGUaGgUGCU-------------UCCGUUGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 12336 0.66 0.796629
Target:  5'- --aCGGCA-CCGuu--GGCAACCGCGu -3'
miRNA:   3'- caaGCCGUaGGUgcuuCCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 32313 0.66 0.796629
Target:  5'- ---aGGUGUCCGCGAgcgAGGCcAUCugGc -3'
miRNA:   3'- caagCCGUAGGUGCU---UCCGuUGGugC- -5'
18617 3' -53.4 NC_004682.1 + 45984 0.66 0.793655
Target:  5'- --gUGGCuuguUCgACGGAGGCGcgacccaguucaugACCACGc -3'
miRNA:   3'- caaGCCGu---AGgUGCUUCCGU--------------UGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 8673 0.66 0.786653
Target:  5'- cGUUCGGCGcgagacaggacuUCCugAUGAguaAGcGCAACCGCa -3'
miRNA:   3'- -CAAGCCGU------------AGG--UGCU---UC-CGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 3658 0.66 0.786653
Target:  5'- cGUUCGGagGUCUGaccgaguacacCGAAGGCGagcugaccGCCACGg -3'
miRNA:   3'- -CAAGCCg-UAGGU-----------GCUUCCGU--------UGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 21414 0.66 0.786653
Target:  5'- ---gGGCAUCgACGuguucacGGGCGACC-CGa -3'
miRNA:   3'- caagCCGUAGgUGCu------UCCGUUGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 16736 0.66 0.785646
Target:  5'- cGUUCGGCGacgaCGCGGAgaaggccGGUAGCCAgGu -3'
miRNA:   3'- -CAAGCCGUag--GUGCUU-------CCGUUGGUgC- -5'
18617 3' -53.4 NC_004682.1 + 17367 0.66 0.776509
Target:  5'- --gCGGCGgcaACGgcGGCAGCCGgGg -3'
miRNA:   3'- caaGCCGUaggUGCuuCCGUUGGUgC- -5'
18617 3' -53.4 NC_004682.1 + 10101 0.66 0.776509
Target:  5'- uGUUCGGUA-CCGacccguccggUGGAGGUAACC-CGg -3'
miRNA:   3'- -CAAGCCGUaGGU----------GCUUCCGUUGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 15280 0.66 0.776509
Target:  5'- -cUCGaCucguUCCGCGAagAGGCcGACCGCGa -3'
miRNA:   3'- caAGCcGu---AGGUGCU--UCCG-UUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 17998 0.66 0.776509
Target:  5'- cGUUgCGGCcUUCGCucaGgcGGCAGCCACc -3'
miRNA:   3'- -CAA-GCCGuAGGUG---CuuCCGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 14978 0.66 0.775486
Target:  5'- -gUCGGCuUCCACGcccacAAGGCGucggugcGCCGgGa -3'
miRNA:   3'- caAGCCGuAGGUGC-----UUCCGU-------UGGUgC- -5'
18617 3' -53.4 NC_004682.1 + 41386 0.66 0.76621
Target:  5'- -aUCaGCAUCaGCGuccGGGCAGCUGCGu -3'
miRNA:   3'- caAGcCGUAGgUGCu--UCCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 4327 0.66 0.763092
Target:  5'- aGUUCGGCAagCACGuugagccgcucaccAAGGCGcuggugACCGCc -3'
miRNA:   3'- -CAAGCCGUagGUGC--------------UUCCGU------UGGUGc -5'
18617 3' -53.4 NC_004682.1 + 12401 0.67 0.755767
Target:  5'- -gUgGGCGUgCCAgGAGcacaggcguGGCAGCCGCa -3'
miRNA:   3'- caAgCCGUA-GGUgCUU---------CCGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 13324 0.67 0.755767
Target:  5'- --aCuGCGUCCACGAcuGGCGAauCCACu -3'
miRNA:   3'- caaGcCGUAGGUGCUu-CCGUU--GGUGc -5'
18617 3' -53.4 NC_004682.1 + 38838 0.67 0.755767
Target:  5'- --aCGGCuugucgaugCCGUGGAuGGCAGCCGCGu -3'
miRNA:   3'- caaGCCGua-------GGUGCUU-CCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 13606 0.67 0.745193
Target:  5'- --gCGGCAUCCggcugaaccagaACGcGGGCAG-CACGg -3'
miRNA:   3'- caaGCCGUAGG------------UGCuUCCGUUgGUGC- -5'
18617 3' -53.4 NC_004682.1 + 46449 0.67 0.745193
Target:  5'- -gUCGGCAccgcgcUCCGCGcccguGGCGGCgGCu -3'
miRNA:   3'- caAGCCGU------AGGUGCuu---CCGUUGgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.