Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18620 | 5' | -58.7 | NC_004682.1 | + | 38055 | 0.66 | 0.566264 |
Target: 5'- gGAucGCUUGGggGaGGCCGguuucGGGGCGUCa -3' miRNA: 3'- gCU--UGAGCCgaC-CUGGC-----UCCCGCAGg -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 29850 | 0.66 | 0.566264 |
Target: 5'- uCGAGCg-GGUUGu-CCGGGaGCGUCCa -3' miRNA: 3'- -GCUUGagCCGACcuGGCUCcCGCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 38190 | 0.66 | 0.555776 |
Target: 5'- aCGGAgUCGacaGaaGGACCGGGGGC-UCUa -3' miRNA: 3'- -GCUUgAGC---CgaCCUGGCUCCCGcAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 19343 | 0.66 | 0.545345 |
Target: 5'- gGGACUCGGaaUGGcgcaaGgCGuGGGCGUUCg -3' miRNA: 3'- gCUUGAGCCg-ACC-----UgGCuCCCGCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 24345 | 0.66 | 0.524682 |
Target: 5'- aGAGCUgGGCUGcGuggUCGAcGGCGUCa -3' miRNA: 3'- gCUUGAgCCGAC-Cu--GGCUcCCGCAGg -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 12264 | 0.66 | 0.524682 |
Target: 5'- cCGAGCaggUCGGCgcgauccgugaGGGCCGcauccuGGGuCGUCCc -3' miRNA: 3'- -GCUUG---AGCCGa----------CCUGGCu-----CCC-GCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 26410 | 0.66 | 0.51854 |
Target: 5'- uCGAACgUCGGCgGGGCCagccGGaucggguugcccucaGCGUCCa -3' miRNA: 3'- -GCUUG-AGCCGaCCUGGcu--CC---------------CGCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 42530 | 0.66 | 0.514462 |
Target: 5'- gCGAACaUCGaGC-GGACgGu-GGCGUCCa -3' miRNA: 3'- -GCUUG-AGC-CGaCCUGgCucCCGCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 23442 | 0.66 | 0.514462 |
Target: 5'- gGAACUaCGGCcaGGAcuucaCCGAGGacgcCGUCCg -3' miRNA: 3'- gCUUGA-GCCGa-CCU-----GGCUCCc---GCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 13537 | 0.67 | 0.504323 |
Target: 5'- aCGGGC-CGaGCaGGACaaCGAGGGCuucgaGUCCg -3' miRNA: 3'- -GCUUGaGC-CGaCCUG--GCUCCCG-----CAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 27173 | 0.67 | 0.490277 |
Target: 5'- uCGAACUCGccccgcaGgaGGGCCGcaggcccgucggucAGGGUGUCg -3' miRNA: 3'- -GCUUGAGC-------CgaCCUGGC--------------UCCCGCAGg -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 48614 | 0.67 | 0.484313 |
Target: 5'- gGGAC-CuGCUGGGCCGGuGG-GUCCg -3' miRNA: 3'- gCUUGaGcCGACCUGGCUcCCgCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 16678 | 0.67 | 0.484313 |
Target: 5'- uCGGGCggcagCGGUgaUGGGCCugGAGGGCucgggucgauGUCCc -3' miRNA: 3'- -GCUUGa----GCCG--ACCUGG--CUCCCG----------CAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 34277 | 0.67 | 0.474451 |
Target: 5'- uCGAGCcUGGUUGG-CCGucAGGGUcuuGUCCu -3' miRNA: 3'- -GCUUGaGCCGACCuGGC--UCCCG---CAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 42971 | 0.67 | 0.455037 |
Target: 5'- gGGugUCaGCggGGGCCuccAGGGCGUCg -3' miRNA: 3'- gCUugAGcCGa-CCUGGc--UCCCGCAGg -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 2609 | 0.68 | 0.445492 |
Target: 5'- aGGugUcgCGGCUGG-CCGAuacgaggccGGCGUCCu -3' miRNA: 3'- gCUugA--GCCGACCuGGCUc--------CCGCAGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 42463 | 0.68 | 0.445492 |
Target: 5'- uGAACU-GGCUGG-CCGGGGuCGgCCu -3' miRNA: 3'- gCUUGAgCCGACCuGGCUCCcGCaGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 9132 | 0.68 | 0.426744 |
Target: 5'- aGAAgUCGGCcaGGGCggugcgUGAGGGCGaCCu -3' miRNA: 3'- gCUUgAGCCGa-CCUG------GCUCCCGCaGG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 37369 | 0.68 | 0.399522 |
Target: 5'- uCGuACUCaGCcaGGGCCG-GGGCGUaCCg -3' miRNA: 3'- -GCuUGAGcCGa-CCUGGCuCCCGCA-GG- -5' |
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18620 | 5' | -58.7 | NC_004682.1 | + | 7121 | 0.69 | 0.360003 |
Target: 5'- -cGACggCGGCUGGuaccugcCCGAgaagacgcucggcugGGGCGUCCu -3' miRNA: 3'- gcUUGa-GCCGACCu------GGCU---------------CCCGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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