miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18643 5' -58 NC_004682.1 + 7297 0.66 0.564337
Target:  5'- aCCGCgaGGGCAUCcuGCGcCGCCUCaaggGCUGGg -3'
miRNA:   3'- -GGUG--UCCGUAG--CGU-GCGGGG----UGACUg -5'
18643 5' -58 NC_004682.1 + 4732 0.66 0.553647
Target:  5'- gCCGCAGGCG-CGCuacACGUcggUCUACcUGACg -3'
miRNA:   3'- -GGUGUCCGUaGCG---UGCG---GGGUG-ACUG- -5'
18643 5' -58 NC_004682.1 + 48161 0.66 0.553647
Target:  5'- cCCcCAGGCAgaggUCGC-UGCCgCCACaccgGGCg -3'
miRNA:   3'- -GGuGUCCGU----AGCGuGCGG-GGUGa---CUG- -5'
18643 5' -58 NC_004682.1 + 43538 0.66 0.543018
Target:  5'- cCUugAGGCggCGCAggaUGCCCuCGCgguaGACg -3'
miRNA:   3'- -GGugUCCGuaGCGU---GCGGG-GUGa---CUG- -5'
18643 5' -58 NC_004682.1 + 3142 0.66 0.532457
Target:  5'- gCGCAGGCggCGCAgcaGCCgCCAacucgGGCa -3'
miRNA:   3'- gGUGUCCGuaGCGUg--CGG-GGUga---CUG- -5'
18643 5' -58 NC_004682.1 + 6908 0.66 0.526155
Target:  5'- aCCGaGGGCAUCGCAaugGCCCUggcgaucaucgacacGCUG-Cg -3'
miRNA:   3'- -GGUgUCCGUAGCGUg--CGGGG---------------UGACuG- -5'
18643 5' -58 NC_004682.1 + 33591 0.66 0.511564
Target:  5'- gCCGaAGGCGUCGgA-GCCCgaGCUGGCc -3'
miRNA:   3'- -GGUgUCCGUAGCgUgCGGGg-UGACUG- -5'
18643 5' -58 NC_004682.1 + 16852 0.66 0.511564
Target:  5'- gCCAUcGGCcugGUgGCugGCCUC-CUGGCu -3'
miRNA:   3'- -GGUGuCCG---UAgCGugCGGGGuGACUG- -5'
18643 5' -58 NC_004682.1 + 14493 0.67 0.501246
Target:  5'- uCCGCAGG-GUCgaGCACGUcaCCCGCgacGACg -3'
miRNA:   3'- -GGUGUCCgUAG--CGUGCG--GGGUGa--CUG- -5'
18643 5' -58 NC_004682.1 + 9845 0.67 0.501246
Target:  5'- aCUAC-GGCAccgaGCugGCCaggCCGCUGGCu -3'
miRNA:   3'- -GGUGuCCGUag--CGugCGG---GGUGACUG- -5'
18643 5' -58 NC_004682.1 + 33298 0.67 0.501246
Target:  5'- gUCACAuuCGUCGUuccgguCGCCCgACUGGCa -3'
miRNA:   3'- -GGUGUccGUAGCGu-----GCGGGgUGACUG- -5'
18643 5' -58 NC_004682.1 + 42545 0.67 0.49102
Target:  5'- aCGguGGCGUC-CACGUCCuCGCggggGACc -3'
miRNA:   3'- gGUguCCGUAGcGUGCGGG-GUGa---CUG- -5'
18643 5' -58 NC_004682.1 + 18208 0.67 0.480892
Target:  5'- aCCACcGcGCAUgGCGCuacgucaucaaGgCCCGCUGGCa -3'
miRNA:   3'- -GGUGuC-CGUAgCGUG-----------CgGGGUGACUG- -5'
18643 5' -58 NC_004682.1 + 2230 0.67 0.480892
Target:  5'- cCCACcGGCccaGCAgGUCCCACcGGCc -3'
miRNA:   3'- -GGUGuCCGuagCGUgCGGGGUGaCUG- -5'
18643 5' -58 NC_004682.1 + 12416 0.67 0.470866
Target:  5'- gCACAGGCGUgGCA-GCCgCACUu-- -3'
miRNA:   3'- gGUGUCCGUAgCGUgCGGgGUGAcug -5'
18643 5' -58 NC_004682.1 + 3288 0.67 0.470866
Target:  5'- aCGCGGGCAUCGU-CGgCCaC-CUGAUg -3'
miRNA:   3'- gGUGUCCGUAGCGuGCgGG-GuGACUG- -5'
18643 5' -58 NC_004682.1 + 39634 0.67 0.460948
Target:  5'- gCACAGGUA-CGCccAUGCCCCGa-GACc -3'
miRNA:   3'- gGUGUCCGUaGCG--UGCGGGGUgaCUG- -5'
18643 5' -58 NC_004682.1 + 7957 0.67 0.451141
Target:  5'- uCCGagaGGGCAUCGagauCGCCCgagggacucgUACUGGCu -3'
miRNA:   3'- -GGUg--UCCGUAGCgu--GCGGG----------GUGACUG- -5'
18643 5' -58 NC_004682.1 + 6117 0.67 0.451141
Target:  5'- gCCACcggcGGCGUCgGCAUGCCCgACgaGAa -3'
miRNA:   3'- -GGUGu---CCGUAG-CGUGCGGGgUGa-CUg -5'
18643 5' -58 NC_004682.1 + 27907 0.68 0.44145
Target:  5'- gCugAGGCGaaGggUGCCCCGCUGGa -3'
miRNA:   3'- gGugUCCGUagCguGCGGGGUGACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.