miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18644 3' -53.6 NC_004682.1 + 683 1.11 0.001006
Target:  5'- aGAGACCACACAACAGCAGACCGACGGa -3'
miRNA:   3'- -CUCUGGUGUGUUGUCGUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 21336 0.81 0.123726
Target:  5'- uGAGACCGCcuuCGGCGGCuccuGGCUGACGGg -3'
miRNA:   3'- -CUCUGGUGu--GUUGUCGu---CUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 10050 0.8 0.142448
Target:  5'- gGGGGgCugACGACAucGCAGACCGAUGGg -3'
miRNA:   3'- -CUCUgGugUGUUGU--CGUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 30711 0.8 0.150638
Target:  5'- cGAGACCGCuuggaucaACGGCuguGGCAGACCGGCGa -3'
miRNA:   3'- -CUCUGGUG--------UGUUG---UCGUCUGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 3657 0.76 0.265394
Target:  5'- uGAGuACCGC-CGACgaGGCGGcACCGACGGa -3'
miRNA:   3'- -CUC-UGGUGuGUUG--UCGUC-UGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 1991 0.75 0.301522
Target:  5'- --cGCUACACGGCGGUuggccccccgAGGCCGACGGc -3'
miRNA:   3'- cucUGGUGUGUUGUCG----------UCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 23998 0.73 0.412576
Target:  5'- cAGACCGCAgAGCAGCacucGGGCCGGuCGu -3'
miRNA:   3'- cUCUGGUGUgUUGUCG----UCUGGCU-GCc -5'
18644 3' -53.6 NC_004682.1 + 19764 0.72 0.431771
Target:  5'- aGGACUACugGGCgAGCaAGGCCGACa- -3'
miRNA:   3'- cUCUGGUGugUUG-UCG-UCUGGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 15707 0.71 0.502781
Target:  5'- -cGACCACGCcaucgcGCAGUgcgugguGGCCGGCGGu -3'
miRNA:   3'- cuCUGGUGUGu-----UGUCGu------CUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 29036 0.71 0.502781
Target:  5'- cGGGAUCG-GCAGCGGCAugccGACCGcACGGa -3'
miRNA:   3'- -CUCUGGUgUGUUGUCGU----CUGGC-UGCC- -5'
18644 3' -53.6 NC_004682.1 + 46772 0.71 0.51335
Target:  5'- cGAGACCGUGCAGgAGCAGaACCugcugGGCGGu -3'
miRNA:   3'- -CUCUGGUGUGUUgUCGUC-UGG-----CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 4531 0.7 0.544488
Target:  5'- -cGACCGCAgCAucgucacGCAGgAGACCGGCuGGu -3'
miRNA:   3'- cuCUGGUGU-GU-------UGUCgUCUGGCUG-CC- -5'
18644 3' -53.6 NC_004682.1 + 3145 0.7 0.556463
Target:  5'- cAGGCgGCGCAGCAGCcgccaacucGGGCaccaCGGCGGg -3'
miRNA:   3'- cUCUGgUGUGUUGUCG---------UCUG----GCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 32941 0.7 0.556463
Target:  5'- uGAGGCa--GCAGuuGCGuGACCGACGGg -3'
miRNA:   3'- -CUCUGgugUGUUguCGU-CUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 20204 0.7 0.567414
Target:  5'- -cGACCGCACGACGGaGGGCUucACGGc -3'
miRNA:   3'- cuCUGGUGUGUUGUCgUCUGGc-UGCC- -5'
18644 3' -53.6 NC_004682.1 + 23397 0.7 0.578419
Target:  5'- aGGGCCGugaACGACAGCgAGaacgccagugcGCCGACGGc -3'
miRNA:   3'- cUCUGGUg--UGUUGUCG-UC-----------UGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 24812 0.69 0.600557
Target:  5'- -cGACCGCcuACGGCGGgAGuCCGACGc -3'
miRNA:   3'- cuCUGGUG--UGUUGUCgUCuGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 17357 0.69 0.600557
Target:  5'- cAGGCCGCugG-CGGCGGcaaCGGCGGc -3'
miRNA:   3'- cUCUGGUGugUuGUCGUCug-GCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 46126 0.69 0.619463
Target:  5'- -uGGCCGCgucggcagcgccgaGCGACAGCAGcACCGA-GGc -3'
miRNA:   3'- cuCUGGUG--------------UGUUGUCGUC-UGGCUgCC- -5'
18644 3' -53.6 NC_004682.1 + 3694 0.69 0.622805
Target:  5'- -uGACCGcCACGGCGGgAGucgucGCUGACGGc -3'
miRNA:   3'- cuCUGGU-GUGUUGUCgUC-----UGGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.