miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18644 3' -53.6 NC_004682.1 + 6139 0.67 0.753977
Target:  5'- --cGCCAaggcgUACGACGGCGGGCCGcuGCGa -3'
miRNA:   3'- cucUGGU-----GUGUUGUCGUCUGGC--UGCc -5'
18644 3' -53.6 NC_004682.1 + 135 0.68 0.656214
Target:  5'- -cGACCGC-CGGCA-CGGGCCGGCa- -3'
miRNA:   3'- cuCUGGUGuGUUGUcGUCUGGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 12872 0.68 0.667319
Target:  5'- uGAGACaugccgUACGCAACGGCGu-CCGACGu -3'
miRNA:   3'- -CUCUG------GUGUGUUGUCGUcuGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 482 0.68 0.67839
Target:  5'- aGGGCCGCuucCGGCGGCGcucACCGACGc -3'
miRNA:   3'- cUCUGGUGu--GUUGUCGUc--UGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 1896 0.68 0.689416
Target:  5'- aGGGAcuCCACAuCGACGGCcagguGGCCGACu- -3'
miRNA:   3'- -CUCU--GGUGU-GUUGUCGu----CUGGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 17350 0.67 0.73284
Target:  5'- uGGACgGCGCGAUGaagggccucucGCAGACCcucGACGGc -3'
miRNA:   3'- cUCUGgUGUGUUGU-----------CGUCUGG---CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 18716 0.67 0.73284
Target:  5'- aAGGCCGCGaaggcagcccucCAGCAGCGcAUCGACGa -3'
miRNA:   3'- cUCUGGUGU------------GUUGUCGUcUGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 25284 0.67 0.73284
Target:  5'- -uGGCCcagugGCGCGugAGCGGcCCaGACGGu -3'
miRNA:   3'- cuCUGG-----UGUGUugUCGUCuGG-CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 21390 0.67 0.743466
Target:  5'- --cAUCGCAUcgGACGGCAuGACCGAgGGc -3'
miRNA:   3'- cucUGGUGUG--UUGUCGU-CUGGCUgCC- -5'
18644 3' -53.6 NC_004682.1 + 31219 0.69 0.645086
Target:  5'- cGAGACCGCcgGCAcCAGCGGgaucagcuucuGCagcaGACGGg -3'
miRNA:   3'- -CUCUGGUG--UGUuGUCGUC-----------UGg---CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 42770 0.69 0.633946
Target:  5'- --uGCCACGCG--GGCAGACCGGgcuuCGGu -3'
miRNA:   3'- cucUGGUGUGUugUCGUCUGGCU----GCC- -5'
18644 3' -53.6 NC_004682.1 + 17698 0.69 0.622805
Target:  5'- -uGACCACgGCGcuGCAGCAGauccaGCCGAUGa -3'
miRNA:   3'- cuCUGGUG-UGU--UGUCGUC-----UGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 1991 0.75 0.301522
Target:  5'- --cGCUACACGGCGGUuggccccccgAGGCCGACGGc -3'
miRNA:   3'- cucUGGUGUGUUGUCG----------UCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 23998 0.73 0.412576
Target:  5'- cAGACCGCAgAGCAGCacucGGGCCGGuCGu -3'
miRNA:   3'- cUCUGGUGUgUUGUCG----UCUGGCU-GCc -5'
18644 3' -53.6 NC_004682.1 + 46772 0.71 0.51335
Target:  5'- cGAGACCGUGCAGgAGCAGaACCugcugGGCGGu -3'
miRNA:   3'- -CUCUGGUGUGUUgUCGUC-UGG-----CUGCC- -5'
18644 3' -53.6 NC_004682.1 + 4531 0.7 0.544488
Target:  5'- -cGACCGCAgCAucgucacGCAGgAGACCGGCuGGu -3'
miRNA:   3'- cuCUGGUGU-GU-------UGUCgUCUGGCUG-CC- -5'
18644 3' -53.6 NC_004682.1 + 3145 0.7 0.556463
Target:  5'- cAGGCgGCGCAGCAGCcgccaacucGGGCaccaCGGCGGg -3'
miRNA:   3'- cUCUGgUGUGUUGUCG---------UCUG----GCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 20204 0.7 0.567414
Target:  5'- -cGACCGCACGACGGaGGGCUucACGGc -3'
miRNA:   3'- cuCUGGUGUGUUGUCgUCUGGc-UGCC- -5'
18644 3' -53.6 NC_004682.1 + 46126 0.69 0.619463
Target:  5'- -uGGCCGCgucggcagcgccgaGCGACAGCAGcACCGA-GGc -3'
miRNA:   3'- cuCUGGUG--------------UGUUGUCGUC-UGGCUgCC- -5'
18644 3' -53.6 NC_004682.1 + 3694 0.69 0.622805
Target:  5'- -uGACCGcCACGGCGGgAGucgucGCUGACGGc -3'
miRNA:   3'- cuCUGGU-GUGUUGUCgUC-----UGGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.