miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18644 3' -53.6 NC_004682.1 + 135 0.68 0.656214
Target:  5'- -cGACCGC-CGGCA-CGGGCCGGCa- -3'
miRNA:   3'- cuCUGGUGuGUUGUcGUCUGGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 482 0.68 0.67839
Target:  5'- aGGGCCGCuucCGGCGGCGcucACCGACGc -3'
miRNA:   3'- cUCUGGUGu--GUUGUCGUc--UGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 683 1.11 0.001006
Target:  5'- aGAGACCACACAACAGCAGACCGACGGa -3'
miRNA:   3'- -CUCUGGUGUGUUGUCGUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 1896 0.68 0.689416
Target:  5'- aGGGAcuCCACAuCGACGGCcagguGGCCGACu- -3'
miRNA:   3'- -CUCU--GGUGU-GUUGUCGu----CUGGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 1991 0.75 0.301522
Target:  5'- --cGCUACACGGCGGUuggccccccgAGGCCGACGGc -3'
miRNA:   3'- cucUGGUGUGUUGUCG----------UCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 2594 0.66 0.774606
Target:  5'- aGGGGCCACAgGGucCAGCAGGCgucccguccuCGaACGGc -3'
miRNA:   3'- -CUCUGGUGUgUU--GUCGUCUG----------GC-UGCC- -5'
18644 3' -53.6 NC_004682.1 + 3145 0.7 0.556463
Target:  5'- cAGGCgGCGCAGCAGCcgccaacucGGGCaccaCGGCGGg -3'
miRNA:   3'- cUCUGgUGUGUUGUCG---------UCUG----GCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 3519 0.66 0.813962
Target:  5'- cGAGGagACGCGGCAGCGG-CUGGCcaaGGa -3'
miRNA:   3'- -CUCUggUGUGUUGUCGUCuGGCUG---CC- -5'
18644 3' -53.6 NC_004682.1 + 3657 0.76 0.265394
Target:  5'- uGAGuACCGC-CGACgaGGCGGcACCGACGGa -3'
miRNA:   3'- -CUC-UGGUGuGUUG--UCGUC-UGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 3694 0.69 0.622805
Target:  5'- -uGACCGcCACGGCGGgAGucgucGCUGACGGc -3'
miRNA:   3'- cuCUGGU-GUGUUGUCgUC-----UGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 4512 0.68 0.696005
Target:  5'- cGGGGCCGCACGcgcuucgACAGCAacggcuacgcccacGGCCaGAgGGa -3'
miRNA:   3'- -CUCUGGUGUGU-------UGUCGU--------------CUGG-CUgCC- -5'
18644 3' -53.6 NC_004682.1 + 4531 0.7 0.544488
Target:  5'- -cGACCGCAgCAucgucacGCAGgAGACCGGCuGGu -3'
miRNA:   3'- cuCUGGUGU-GU-------UGUCgUCUGGCUG-CC- -5'
18644 3' -53.6 NC_004682.1 + 4621 0.66 0.80439
Target:  5'- gGAGGCCACGCucGCuGCcgAGAUCGA-GGc -3'
miRNA:   3'- -CUCUGGUGUGu-UGuCG--UCUGGCUgCC- -5'
18644 3' -53.6 NC_004682.1 + 6139 0.67 0.753977
Target:  5'- --cGCCAaggcgUACGACGGCGGGCCGcuGCGa -3'
miRNA:   3'- cucUGGU-----GUGUUGUCGUCUGGC--UGCc -5'
18644 3' -53.6 NC_004682.1 + 7106 0.66 0.784701
Target:  5'- cGGGCCGCuACGACGGCGcGAgCGAUc- -3'
miRNA:   3'- cUCUGGUG-UGUUGUCGU-CUgGCUGcc -5'
18644 3' -53.6 NC_004682.1 + 7912 0.66 0.794632
Target:  5'- aAGACCGuccuCGACuucaucGGgGGGCCGGCGGg -3'
miRNA:   3'- cUCUGGUgu--GUUG------UCgUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 10050 0.8 0.142448
Target:  5'- gGGGGgCugACGACAucGCAGACCGAUGGg -3'
miRNA:   3'- -CUCUgGugUGUUGU--CGUCUGGCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 10756 0.67 0.753977
Target:  5'- cGGGCCACACAGCGccucuCGGGCgCGGUGGu -3'
miRNA:   3'- cUCUGGUGUGUUGUc----GUCUG-GCUGCC- -5'
18644 3' -53.6 NC_004682.1 + 12872 0.68 0.667319
Target:  5'- uGAGACaugccgUACGCAACGGCGu-CCGACGu -3'
miRNA:   3'- -CUCUG------GUGUGUUGUCGUcuGGCUGCc -5'
18644 3' -53.6 NC_004682.1 + 12937 0.66 0.784701
Target:  5'- aGAGACCGCGCuGAUcaacguccguuuGGCuGAugUCGGCGGa -3'
miRNA:   3'- -CUCUGGUGUG-UUG------------UCGuCU--GGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.