miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18650 3' -52.2 NC_004682.1 + 9124 0.66 0.86566
Target:  5'- gUCGGUg--UgGCCAagCGUCGACUCGAu -3'
miRNA:   3'- -AGUCGaugAgUGGUg-GCAGUUGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 28216 0.66 0.86566
Target:  5'- aUCAGCU-UUCGacaGCCGUCGcaggggGCUCGGg -3'
miRNA:   3'- -AGUCGAuGAGUgg-UGGCAGU------UGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 21167 0.66 0.86566
Target:  5'- --cGCaGCUCACCAUCGU-GugUCGGc -3'
miRNA:   3'- aguCGaUGAGUGGUGGCAgUugAGCU- -5'
18650 3' -52.2 NC_004682.1 + 17799 0.66 0.86483
Target:  5'- cCGGCc-CUCGCCACCGcgaugggUCAgauggcggGCUCGGu -3'
miRNA:   3'- aGUCGauGAGUGGUGGC-------AGU--------UGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 30471 0.66 0.848584
Target:  5'- cCGGuCUGCUCgGCCACCGUCuugGCa--- -3'
miRNA:   3'- aGUC-GAUGAG-UGGUGGCAGu--UGagcu -5'
18650 3' -52.2 NC_004682.1 + 27604 0.66 0.839682
Target:  5'- gUAGCgACUaucaCGCCGCCGUCGAUgacaagCGGc -3'
miRNA:   3'- aGUCGaUGA----GUGGUGGCAGUUGa-----GCU- -5'
18650 3' -52.2 NC_004682.1 + 7190 0.66 0.839682
Target:  5'- gCAGgUACcaGCCGCCGUCGACa--- -3'
miRNA:   3'- aGUCgAUGagUGGUGGCAGUUGagcu -5'
18650 3' -52.2 NC_004682.1 + 49568 0.66 0.839682
Target:  5'- aUCGGgUcCUUgcgaACCACCGUCAGCgucUCGGc -3'
miRNA:   3'- -AGUCgAuGAG----UGGUGGCAGUUG---AGCU- -5'
18650 3' -52.2 NC_004682.1 + 21290 0.66 0.839682
Target:  5'- aCGGCUGCcuggucugggaCAUCAUCGaCAACUCGGg -3'
miRNA:   3'- aGUCGAUGa----------GUGGUGGCaGUUGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 6252 0.66 0.839682
Target:  5'- gUCAGCgucguCguaGCCgaaauaGCCGUCGACUCGc -3'
miRNA:   3'- -AGUCGau---Gag-UGG------UGGCAGUUGAGCu -5'
18650 3' -52.2 NC_004682.1 + 29053 0.67 0.821199
Target:  5'- -gGGCUGCUgACCAgCCcUCAGUUCGAc -3'
miRNA:   3'- agUCGAUGAgUGGU-GGcAGUUGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 47460 0.67 0.811638
Target:  5'- -aGGCg--UCAUCGCCGUCAACUgaGAg -3'
miRNA:   3'- agUCGaugAGUGGUGGCAGUUGAg-CU- -5'
18650 3' -52.2 NC_004682.1 + 48105 0.67 0.801878
Target:  5'- aCGGCgag-CAUCACUcgGUCGACUCGGc -3'
miRNA:   3'- aGUCGaugaGUGGUGG--CAGUUGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 36550 0.67 0.801878
Target:  5'- -aGGCUuggACUCGCCGCCcugCGGCUUGc -3'
miRNA:   3'- agUCGA---UGAGUGGUGGca-GUUGAGCu -5'
18650 3' -52.2 NC_004682.1 + 12706 0.67 0.79193
Target:  5'- aCGGCgGCuUCGCgACCGUCGAUgaCGAg -3'
miRNA:   3'- aGUCGaUG-AGUGgUGGCAGUUGa-GCU- -5'
18650 3' -52.2 NC_004682.1 + 4473 0.67 0.79193
Target:  5'- gUCAGCUugUCGgCACCG-C-GCUCc- -3'
miRNA:   3'- -AGUCGAugAGUgGUGGCaGuUGAGcu -5'
18650 3' -52.2 NC_004682.1 + 17076 0.67 0.780785
Target:  5'- -aGGCccUGCUCgaagaccccggagACCGCCGUCuucaucuGCUCGAa -3'
miRNA:   3'- agUCG--AUGAG-------------UGGUGGCAGu------UGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 35317 0.69 0.662345
Target:  5'- aCGGCcucgggGC-CGCUGCCGUUGGCUCGGa -3'
miRNA:   3'- aGUCGa-----UGaGUGGUGGCAGUUGAGCU- -5'
18650 3' -52.2 NC_004682.1 + 3094 0.7 0.628466
Target:  5'- cCGGCUACccCACCACCG-CGACcaUCGc -3'
miRNA:   3'- aGUCGAUGa-GUGGUGGCaGUUG--AGCu -5'
18650 3' -52.2 NC_004682.1 + 8297 0.7 0.617166
Target:  5'- --cGCgaggACguggaCGCCACCGUCcGCUCGAu -3'
miRNA:   3'- aguCGa---UGa----GUGGUGGCAGuUGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.