miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18675 3' -58.3 NC_004682.1 + 8613 1.09 0.000375
Target:  5'- uUCGCAAGGCCAGCAAGGACAGCGGCAa -3'
miRNA:   3'- -AGCGUUCCGGUCGUUCCUGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 25928 0.77 0.091484
Target:  5'- aC-CAAGGCCAGCAccccGGACgAGCGGCGc -3'
miRNA:   3'- aGcGUUCCGGUCGUu---CCUG-UCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 42984 0.76 0.114793
Target:  5'- aUCGgGGGGCCGGCGGGccaugaGCAGUGGCGc -3'
miRNA:   3'- -AGCgUUCCGGUCGUUCc-----UGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 34542 0.74 0.143557
Target:  5'- cCGCAucccGGuGCCGGUgaagaaGAGGACGGUGGCAc -3'
miRNA:   3'- aGCGU----UC-CGGUCG------UUCCUGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 8725 0.74 0.151715
Target:  5'- aCGCGAGGaCCGcGCA--GACGGCGGCGu -3'
miRNA:   3'- aGCGUUCC-GGU-CGUucCUGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 13508 0.73 0.164743
Target:  5'- gUGCAAGGCCAGUccGGuACGuCGGCAc -3'
miRNA:   3'- aGCGUUCCGGUCGuuCC-UGUcGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 33578 0.73 0.164743
Target:  5'- uUCGCGAagcuGGCCccgcAGCAGGccgcuGGCGGCGGCAa -3'
miRNA:   3'- -AGCGUU----CCGG----UCGUUC-----CUGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 15982 0.73 0.173979
Target:  5'- cCGCAAGGCCGGCucauucgcauGGAUGGCcGCGa -3'
miRNA:   3'- aGCGUUCCGGUCGuu--------CCUGUCGcCGU- -5'
18675 3' -58.3 NC_004682.1 + 25515 0.72 0.193841
Target:  5'- -aGCcagAAGGUCAGgAGGGACAGCaGCAg -3'
miRNA:   3'- agCG---UUCCGGUCgUUCCUGUCGcCGU- -5'
18675 3' -58.3 NC_004682.1 + 26011 0.71 0.227342
Target:  5'- gUCGCGaugAGGCCGGCGucGGACucccgccguaGGCGGUc -3'
miRNA:   3'- -AGCGU---UCCGGUCGUu-CCUG----------UCGCCGu -5'
18675 3' -58.3 NC_004682.1 + 29241 0.7 0.27248
Target:  5'- cUGCGAGa-CAGCcguGGACGGCGGCGa -3'
miRNA:   3'- aGCGUUCcgGUCGuu-CCUGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 21896 0.7 0.279486
Target:  5'- cUCGCu-GGucuCCAGCAgcGGGaucgGCAGCGGCAu -3'
miRNA:   3'- -AGCGuuCC---GGUCGU--UCC----UGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 16644 0.69 0.301363
Target:  5'- cCGCAAGuuCCAGCAGGcGCugcGCGGCAu -3'
miRNA:   3'- aGCGUUCc-GGUCGUUCcUGu--CGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 8988 0.69 0.308179
Target:  5'- -gGCGGGGCCgauaaggccgacgAGCAguuguGGGACuGGUGGCAg -3'
miRNA:   3'- agCGUUCCGG-------------UCGU-----UCCUG-UCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 29099 0.69 0.332552
Target:  5'- gCGUGAcgacGGCCAGUAcuGGGucCAGUGGCAg -3'
miRNA:   3'- aGCGUU----CCGGUCGU--UCCu-GUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 27532 0.69 0.340711
Target:  5'- gUCGCGAGGUCcGCGAGGGCcGUGa-- -3'
miRNA:   3'- -AGCGUUCCGGuCGUUCCUGuCGCcgu -5'
18675 3' -58.3 NC_004682.1 + 39005 0.69 0.340711
Target:  5'- uUCGCAuGuCCGGuCAAGGGCAGCgcgguGGCGa -3'
miRNA:   3'- -AGCGUuCcGGUC-GUUCCUGUCG-----CCGU- -5'
18675 3' -58.3 NC_004682.1 + 47274 0.68 0.369521
Target:  5'- -gGCAAgccucggaucuccucGGCCAGCGccAGGACuAGCGGg- -3'
miRNA:   3'- agCGUU---------------CCGGUCGU--UCCUG-UCGCCgu -5'
18675 3' -58.3 NC_004682.1 + 455 0.68 0.373018
Target:  5'- cUC-CAGGGCCGGUAuccagcggccuccAGGGCcgcuuccGGCGGCGc -3'
miRNA:   3'- -AGcGUUCCGGUCGU-------------UCCUG-------UCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 6986 0.68 0.382751
Target:  5'- aUCGcCAGGGCCAuuGCGAugcccucGGugAGCGGaCGc -3'
miRNA:   3'- -AGC-GUUCCGGU--CGUU-------CCugUCGCC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.