Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18675 | 3' | -58.3 | NC_004682.1 | + | 455 | 0.68 | 0.373018 |
Target: 5'- cUC-CAGGGCCGGUAuccagcggccuccAGGGCcgcuuccGGCGGCGc -3' miRNA: 3'- -AGcGUUCCGGUCGU-------------UCCUG-------UCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 1877 | 0.68 | 0.383644 |
Target: 5'- cCGCAAGGCCcugcgGGCGAGGgacuccacaucgACGGCcaGGUg -3' miRNA: 3'- aGCGUUCCGG-----UCGUUCC------------UGUCG--CCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 2572 | 0.66 | 0.479528 |
Target: 5'- gCcCAAGGCCcGCAGGGcauuCAGgGGCc -3' miRNA: 3'- aGcGUUCCGGuCGUUCCu---GUCgCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 6986 | 0.68 | 0.382751 |
Target: 5'- aUCGcCAGGGCCAuuGCGAugcccucGGugAGCGGaCGc -3' miRNA: 3'- -AGC-GUUCCGGU--CGUU-------CCugUCGCC-GU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 8613 | 1.09 | 0.000375 |
Target: 5'- uUCGCAAGGCCAGCAAGGACAGCGGCAa -3' miRNA: 3'- -AGCGUUCCGGUCGUUCCUGUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 8725 | 0.74 | 0.151715 |
Target: 5'- aCGCGAGGaCCGcGCA--GACGGCGGCGu -3' miRNA: 3'- aGCGUUCC-GGU-CGUucCUGUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 8988 | 0.69 | 0.308179 |
Target: 5'- -gGCGGGGCCgauaaggccgacgAGCAguuguGGGACuGGUGGCAg -3' miRNA: 3'- agCGUUCCGG-------------UCGU-----UCCUG-UCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 9845 | 0.68 | 0.383644 |
Target: 5'- gCGCGuGGCCuaCAAGGucaugaACGGCGGCGa -3' miRNA: 3'- aGCGUuCCGGucGUUCC------UGUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 12857 | 0.66 | 0.489765 |
Target: 5'- aUCGCuuggggGAGGCCGGUuucGGGGCgucAGCGcGCu -3' miRNA: 3'- -AGCG------UUCCGGUCGu--UCCUG---UCGC-CGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 13508 | 0.73 | 0.164743 |
Target: 5'- gUGCAAGGCCAGUccGGuACGuCGGCAc -3' miRNA: 3'- aGCGUUCCGGUCGuuCC-UGUcGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 15982 | 0.73 | 0.173979 |
Target: 5'- cCGCAAGGCCGGCucauucgcauGGAUGGCcGCGa -3' miRNA: 3'- aGCGUUCCGGUCGuu--------CCUGUCGcCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 16644 | 0.69 | 0.301363 |
Target: 5'- cCGCAAGuuCCAGCAGGcGCugcGCGGCAu -3' miRNA: 3'- aGCGUUCc-GGUCGUUCcUGu--CGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 16922 | 0.66 | 0.489765 |
Target: 5'- gCGCuguGGcGCuCGGCAuGGACgggaucaaGGCGGCAg -3' miRNA: 3'- aGCGu--UC-CG-GUCGUuCCUG--------UCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 17595 | 0.66 | 0.500103 |
Target: 5'- -aGCAcguugccgaucAGGCCcgagAGCGAGGuCAGCgcuGGCAu -3' miRNA: 3'- agCGU-----------UCCGG----UCGUUCCuGUCG---CCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 18119 | 0.66 | 0.459376 |
Target: 5'- gCGCAGGGC--GCGucGGACAucGCGGCc -3' miRNA: 3'- aGCGUUCCGguCGUu-CCUGU--CGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 21896 | 0.7 | 0.279486 |
Target: 5'- cUCGCu-GGucuCCAGCAgcGGGaucgGCAGCGGCAu -3' miRNA: 3'- -AGCGuuCC---GGUCGU--UCC----UGUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 23234 | 0.66 | 0.500103 |
Target: 5'- cCGCGAGaUCcGCAAGGACaucGGUGGCc -3' miRNA: 3'- aGCGUUCcGGuCGUUCCUG---UCGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 25266 | 0.66 | 0.479528 |
Target: 5'- gCGuCAAGGCCcacGGCGuGGccCAGUGGCGc -3' miRNA: 3'- aGC-GUUCCGG---UCGUuCCu-GUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 25515 | 0.72 | 0.193841 |
Target: 5'- -aGCcagAAGGUCAGgAGGGACAGCaGCAg -3' miRNA: 3'- agCG---UUCCGGUCgUUCCUGUCGcCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 25928 | 0.77 | 0.091484 |
Target: 5'- aC-CAAGGCCAGCAccccGGACgAGCGGCGc -3' miRNA: 3'- aGcGUUCCGGUCGUu---CCUG-UCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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