Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18675 | 3' | -58.3 | NC_004682.1 | + | 23234 | 0.66 | 0.500103 |
Target: 5'- cCGCGAGaUCcGCAAGGACaucGGUGGCc -3' miRNA: 3'- aGCGUUCcGGuCGUUCCUG---UCGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 18119 | 0.66 | 0.459376 |
Target: 5'- gCGCAGGGC--GCGucGGACAucGCGGCc -3' miRNA: 3'- aGCGUUCCGguCGUu-CCUGU--CGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 40372 | 0.66 | 0.469397 |
Target: 5'- cUCGCuGGGCCAGCuc-GAuCAGCaGCu -3' miRNA: 3'- -AGCGuUCCGGUCGuucCU-GUCGcCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 2572 | 0.66 | 0.479528 |
Target: 5'- gCcCAAGGCCcGCAGGGcauuCAGgGGCc -3' miRNA: 3'- aGcGUUCCGGuCGUUCCu---GUCgCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 25266 | 0.66 | 0.479528 |
Target: 5'- gCGuCAAGGCCcacGGCGuGGccCAGUGGCGc -3' miRNA: 3'- aGC-GUUCCGG---UCGUuCCu-GUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 43352 | 0.66 | 0.479528 |
Target: 5'- cUCGCGGGGCCAcucccccaagucGUAGGGguACGuCGGCu -3' miRNA: 3'- -AGCGUUCCGGU------------CGUUCC--UGUcGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 45555 | 0.66 | 0.486683 |
Target: 5'- gCGcCGGGGCCGGCGugagcagcagccccAGcGCGGCGaGCAu -3' miRNA: 3'- aGC-GUUCCGGUCGU--------------UCcUGUCGC-CGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 26305 | 0.66 | 0.488737 |
Target: 5'- cCGCAGuGGCCgaccccgAGCAuuGGGuuGGCGGUg -3' miRNA: 3'- aGCGUU-CCGG-------UCGU--UCCugUCGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 16922 | 0.66 | 0.489765 |
Target: 5'- gCGCuguGGcGCuCGGCAuGGACgggaucaaGGCGGCAg -3' miRNA: 3'- aGCGu--UC-CG-GUCGUuCCUG--------UCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 9845 | 0.68 | 0.383644 |
Target: 5'- gCGCGuGGCCuaCAAGGucaugaACGGCGGCGa -3' miRNA: 3'- aGCGUuCCGGucGUUCC------UGUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 1877 | 0.68 | 0.383644 |
Target: 5'- cCGCAAGGCCcugcgGGCGAGGgacuccacaucgACGGCcaGGUg -3' miRNA: 3'- aGCGUUCCGG-----UCGUUCC------------UGUCG--CCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 455 | 0.68 | 0.373018 |
Target: 5'- cUC-CAGGGCCGGUAuccagcggccuccAGGGCcgcuuccGGCGGCGc -3' miRNA: 3'- -AGcGUUCCGGUCGU-------------UCCUG-------UCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 13508 | 0.73 | 0.164743 |
Target: 5'- gUGCAAGGCCAGUccGGuACGuCGGCAc -3' miRNA: 3'- aGCGUUCCGGUCGuuCC-UGUcGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 15982 | 0.73 | 0.173979 |
Target: 5'- cCGCAAGGCCGGCucauucgcauGGAUGGCcGCGa -3' miRNA: 3'- aGCGUUCCGGUCGuu--------CCUGUCGcCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 25515 | 0.72 | 0.193841 |
Target: 5'- -aGCcagAAGGUCAGgAGGGACAGCaGCAg -3' miRNA: 3'- agCG---UUCCGGUCgUUCCUGUCGcCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 26011 | 0.71 | 0.227342 |
Target: 5'- gUCGCGaugAGGCCGGCGucGGACucccgccguaGGCGGUc -3' miRNA: 3'- -AGCGU---UCCGGUCGUu-CCUG----------UCGCCGu -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 29241 | 0.7 | 0.27248 |
Target: 5'- cUGCGAGa-CAGCcguGGACGGCGGCGa -3' miRNA: 3'- aGCGUUCcgGUCGuu-CCUGUCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 16644 | 0.69 | 0.301363 |
Target: 5'- cCGCAAGuuCCAGCAGGcGCugcGCGGCAu -3' miRNA: 3'- aGCGUUCc-GGUCGUUCcUGu--CGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 8988 | 0.69 | 0.308179 |
Target: 5'- -gGCGGGGCCgauaaggccgacgAGCAguuguGGGACuGGUGGCAg -3' miRNA: 3'- agCGUUCCGG-------------UCGU-----UCCUG-UCGCCGU- -5' |
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18675 | 3' | -58.3 | NC_004682.1 | + | 47274 | 0.68 | 0.369521 |
Target: 5'- -gGCAAgccucggaucuccucGGCCAGCGccAGGACuAGCGGg- -3' miRNA: 3'- agCGUU---------------CCGGUCGU--UCCUG-UCGCCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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