miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18680 5' -61.1 NC_004682.1 + 31077 0.66 0.419675
Target:  5'- cGGCCuugcucgcccaguaGUCCugcuuccgcagcauGUCCUCGGAGAGCUu- -3'
miRNA:   3'- uCCGG--------------UAGGc-------------CAGGAGCCUCUCGGcu -5'
18680 5' -61.1 NC_004682.1 + 8226 0.66 0.418763
Target:  5'- gAGcGUgAUCCGGUcacCCUUGGugaGGGGCUGAa -3'
miRNA:   3'- -UC-CGgUAGGCCA---GGAGCC---UCUCGGCU- -5'
18680 5' -61.1 NC_004682.1 + 7632 0.66 0.409708
Target:  5'- -cGCCcgCCGG-CCUCGGAGuAGauGAu -3'
miRNA:   3'- ucCGGuaGGCCaGGAGCCUC-UCggCU- -5'
18680 5' -61.1 NC_004682.1 + 40816 0.66 0.409708
Target:  5'- cGGGCUggCCGGUCCagaUCGaGAagcacGAaGCCGAg -3'
miRNA:   3'- -UCCGGuaGGCCAGG---AGC-CU-----CU-CGGCU- -5'
18680 5' -61.1 NC_004682.1 + 46351 0.66 0.406121
Target:  5'- cGaGCCcgCCGGgugcgagggaacgCCUcgCGGAGAGCCa- -3'
miRNA:   3'- uC-CGGuaGGCCa------------GGA--GCCUCUCGGcu -5'
18680 5' -61.1 NC_004682.1 + 47293 0.66 0.400777
Target:  5'- cGGCCAgcgCCaggacuagcgGGUCCUUGGccAGCCGc -3'
miRNA:   3'- uCCGGUa--GG----------CCAGGAGCCucUCGGCu -5'
18680 5' -61.1 NC_004682.1 + 1938 0.66 0.400777
Target:  5'- aGGGCCuUgCGGcCCgauggggcCGGGGAGcCCGAg -3'
miRNA:   3'- -UCCGGuAgGCCaGGa-------GCCUCUC-GGCU- -5'
18680 5' -61.1 NC_004682.1 + 530 0.66 0.391971
Target:  5'- gAGGCCGcuggauaCCGGcCCU-GGAG-GCCGGu -3'
miRNA:   3'- -UCCGGUa------GGCCaGGAgCCUCuCGGCU- -5'
18680 5' -61.1 NC_004682.1 + 5221 0.66 0.374741
Target:  5'- cGGGCCu--UGG-CCUCGGAGAuGCCc- -3'
miRNA:   3'- -UCCGGuagGCCaGGAGCCUCU-CGGcu -5'
18680 5' -61.1 NC_004682.1 + 47609 0.66 0.374741
Target:  5'- uGGCgA-CCGG-CCUCGGAGAccuuGCCu- -3'
miRNA:   3'- uCCGgUaGGCCaGGAGCCUCU----CGGcu -5'
18680 5' -61.1 NC_004682.1 + 19799 0.67 0.36632
Target:  5'- cGGCuCAgCgGGcUCCUCGGuGGAGCCa- -3'
miRNA:   3'- uCCG-GUaGgCC-AGGAGCC-UCUCGGcu -5'
18680 5' -61.1 NC_004682.1 + 40754 0.67 0.365485
Target:  5'- gGGGUCAUCCgcaaccagaagauGGUcgaCCUCGGA--GCCGAu -3'
miRNA:   3'- -UCCGGUAGG-------------CCA---GGAGCCUcuCGGCU- -5'
18680 5' -61.1 NC_004682.1 + 28703 0.67 0.349874
Target:  5'- aAGGCCggcacuggaccgGUUCGGUCUUCcucuacggGGGGAgGCCGGa -3'
miRNA:   3'- -UCCGG------------UAGGCCAGGAG--------CCUCU-CGGCU- -5'
18680 5' -61.1 NC_004682.1 + 31817 0.67 0.349874
Target:  5'- cGGGCuCAUCUGGgcuUCCUCGGAcuggacacgGAGaCGAc -3'
miRNA:   3'- -UCCG-GUAGGCC---AGGAGCCU---------CUCgGCU- -5'
18680 5' -61.1 NC_004682.1 + 6980 0.67 0.34185
Target:  5'- aGGGCCAUUgCGauGcCCUCGGuGAGCgGAc -3'
miRNA:   3'- -UCCGGUAG-GC--CaGGAGCCuCUCGgCU- -5'
18680 5' -61.1 NC_004682.1 + 40013 0.67 0.33396
Target:  5'- gAGGCCGa--GGcCCUCGGuG-GCCGAc -3'
miRNA:   3'- -UCCGGUaggCCaGGAGCCuCuCGGCU- -5'
18680 5' -61.1 NC_004682.1 + 23982 0.67 0.326204
Target:  5'- cGGCag-CCGcGUCCUgGGGGuguGGCCGGu -3'
miRNA:   3'- uCCGguaGGC-CAGGAgCCUC---UCGGCU- -5'
18680 5' -61.1 NC_004682.1 + 27928 0.68 0.311096
Target:  5'- uGGCCuucgggCUGGUCC--GGGGGGCCGu -3'
miRNA:   3'- uCCGGua----GGCCAGGagCCUCUCGGCu -5'
18680 5' -61.1 NC_004682.1 + 42175 0.69 0.275673
Target:  5'- gAGGCCgcGUCCuGcUCCUCGGugAGGGCCu- -3'
miRNA:   3'- -UCCGG--UAGGcC-AGGAGCC--UCUCGGcu -5'
18680 5' -61.1 NC_004682.1 + 22186 0.7 0.23751
Target:  5'- cGGGCCGUCCuuGUCCcagCGGu-AGCCGAu -3'
miRNA:   3'- -UCCGGUAGGc-CAGGa--GCCucUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.