Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18683 | 5' | -62.5 | NC_004682.1 | + | 10499 | 1.13 | 0.0001 |
Target: 5'- aGGAGGCCGGUGACGCAGGCGUGGCCCa -3' miRNA: 3'- -CCUCCGGCCACUGCGUCCGCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 45634 | 0.74 | 0.101951 |
Target: 5'- uGGGGcugcugcucacGCCGGccccGGCGCAGGCG-GGUCCa -3' miRNA: 3'- -CCUC-----------CGGCCa---CUGCGUCCGCaCCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 26018 | 0.73 | 0.125982 |
Target: 5'- uGAGGCCGGcgucgGAcucccgcCGUAGGCGgucgauugUGGCCCu -3' miRNA: 3'- cCUCCGGCCa----CU-------GCGUCCGC--------ACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 4551 | 0.72 | 0.144184 |
Target: 5'- aGGAGaCCGGc--UGguGGUGUGGCCCu -3' miRNA: 3'- -CCUCcGGCCacuGCguCCGCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 20030 | 0.71 | 0.173075 |
Target: 5'- cGGGGCCGGcaaccUGACgGUAucGG-GUGGCCCa -3' miRNA: 3'- cCUCCGGCC-----ACUG-CGU--CCgCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 8859 | 0.7 | 0.196772 |
Target: 5'- cGAGcGCCGGcccGACGCcguAGGCGUcacGGUCCc -3' miRNA: 3'- cCUC-CGGCCa--CUGCG---UCCGCA---CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 8947 | 0.7 | 0.20184 |
Target: 5'- uGGGGGaCC-GUGACGCcuacGGCGUcgGGCCg -3' miRNA: 3'- -CCUCC-GGcCACUGCGu---CCGCA--CCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 12260 | 0.7 | 0.20184 |
Target: 5'- aGGAucGGCuCGGUGACGUuguccagcaGGGUGccGGUCCa -3' miRNA: 3'- -CCU--CCG-GCCACUGCG---------UCCGCa-CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 17416 | 0.69 | 0.228901 |
Target: 5'- uGGAGuCCGGUc-UGCAGGCGaugGGCCa -3' miRNA: 3'- -CCUCcGGCCAcuGCGUCCGCa--CCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 12848 | 0.69 | 0.228901 |
Target: 5'- gGGAGGCCGGUuucggGGCGuCAGcGCGcu-CCCa -3' miRNA: 3'- -CCUCCGGCCA-----CUGC-GUC-CGCaccGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 13076 | 0.69 | 0.234668 |
Target: 5'- -cGGGUCGGUGACcuuGguGGCcaGGUCCg -3' miRNA: 3'- ccUCCGGCCACUG---CguCCGcaCCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 35778 | 0.69 | 0.241153 |
Target: 5'- uGGAGGaguucaagauccuccCCGGUgGACGCcaccugugggcaucAGGCGUGaagaacGCCCa -3' miRNA: 3'- -CCUCC---------------GGCCA-CUGCG--------------UCCGCAC------CGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 6247 | 0.68 | 0.246569 |
Target: 5'- uGAGGUCaGUGACGCcgaccuccGGGCucugGGCCUg -3' miRNA: 3'- cCUCCGGcCACUGCG--------UCCGca--CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 5144 | 0.68 | 0.258966 |
Target: 5'- gGGAGcaGCCGGUGcgGCGUcGGCGUacgcguaGCCCu -3' miRNA: 3'- -CCUC--CGGCCAC--UGCGuCCGCAc------CGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 7568 | 0.68 | 0.258966 |
Target: 5'- cGAGGCCGGcgGGCGCAu-CGaGGCCg -3' miRNA: 3'- cCUCCGGCCa-CUGCGUccGCaCCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 28665 | 0.68 | 0.265353 |
Target: 5'- gGGAGGCCGGau-CGCuccGGUGccaucugGGUCCg -3' miRNA: 3'- -CCUCCGGCCacuGCGu--CCGCa------CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 35061 | 0.68 | 0.278509 |
Target: 5'- uGGAGGUCGaUGACGaguucuGG-GUGGCCg -3' miRNA: 3'- -CCUCCGGCcACUGCgu----CCgCACCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 30671 | 0.68 | 0.285279 |
Target: 5'- aGGAcGGCgCGGaccuccaccugaUGAcCGCAcgggccGCGUGGCCCg -3' miRNA: 3'- -CCU-CCG-GCC------------ACU-GCGUc-----CGCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 19340 | 0.68 | 0.285279 |
Target: 5'- cGAGGgacUCGGaaUGGCGCaAGGCGUGGgCg -3' miRNA: 3'- cCUCC---GGCC--ACUGCG-UCCGCACCgGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 2309 | 0.67 | 0.292179 |
Target: 5'- -cGGGCCGGUGGgaccUGCuGGGCcGgugGGUCCg -3' miRNA: 3'- ccUCCGGCCACU----GCG-UCCG-Ca--CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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