Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18683 | 5' | -62.5 | NC_004682.1 | + | 10499 | 1.13 | 0.0001 |
Target: 5'- aGGAGGCCGGUGACGCAGGCGUGGCCCa -3' miRNA: 3'- -CCUCCGGCCACUGCGUCCGCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 2013 | 0.66 | 0.368334 |
Target: 5'- cGAGGCCGacGGCGCacccguccaGGGUGUcgagGGUCCa -3' miRNA: 3'- cCUCCGGCcaCUGCG---------UCCGCA----CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 23397 | 0.66 | 0.344123 |
Target: 5'- -aAGGCUGGcucggcacUGGCGCAuucgagguagguGGCGgGGCCUg -3' miRNA: 3'- ccUCCGGCC--------ACUGCGU------------CCGCaCCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 25242 | 0.67 | 0.321079 |
Target: 5'- cGGAGaCCGGcaagGuagcccacCGCGucaaggcccacGGCGUGGCCCa -3' miRNA: 3'- -CCUCcGGCCa---Cu-------GCGU-----------CCGCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 48649 | 0.67 | 0.313658 |
Target: 5'- -aAGGuCUGGUcGACGUAGGCGaUGuugauGCCCu -3' miRNA: 3'- ccUCC-GGCCA-CUGCGUCCGC-AC-----CGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 28238 | 0.67 | 0.313658 |
Target: 5'- aGGGGGCUcgGGUGAUGUAGaGgGUcGCuCCg -3' miRNA: 3'- -CCUCCGG--CCACUGCGUC-CgCAcCG-GG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 6085 | 0.67 | 0.313658 |
Target: 5'- cGGcGGGCUGGUGAgcCGUuGGCaGaagacgaugcUGGCCCg -3' miRNA: 3'- -CC-UCCGGCCACU--GCGuCCG-C----------ACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 44164 | 0.67 | 0.299208 |
Target: 5'- cGGGGGUCGGagacGACGaCGGGauCGUGGgUCg -3' miRNA: 3'- -CCUCCGGCCa---CUGC-GUCC--GCACCgGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 22851 | 0.67 | 0.292179 |
Target: 5'- cGGAGcccgcGCUGGUGcGCGguGGCaucaUGGCCg -3' miRNA: 3'- -CCUC-----CGGCCAC-UGCguCCGc---ACCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 1637 | 0.67 | 0.292179 |
Target: 5'- uGAGGCaucuGGUGGCGacccguuGGCGUGGgggaCCg -3' miRNA: 3'- cCUCCGg---CCACUGCgu-----CCGCACCg---GG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 19340 | 0.68 | 0.285279 |
Target: 5'- cGAGGgacUCGGaaUGGCGCaAGGCGUGGgCg -3' miRNA: 3'- cCUCC---GGCC--ACUGCG-UCCGCACCgGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 26018 | 0.73 | 0.125982 |
Target: 5'- uGAGGCCGGcgucgGAcucccgcCGUAGGCGgucgauugUGGCCCu -3' miRNA: 3'- cCUCCGGCCa----CU-------GCGUCCGC--------ACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 4551 | 0.72 | 0.144184 |
Target: 5'- aGGAGaCCGGc--UGguGGUGUGGCCCu -3' miRNA: 3'- -CCUCcGGCCacuGCguCCGCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 20030 | 0.71 | 0.173075 |
Target: 5'- cGGGGCCGGcaaccUGACgGUAucGG-GUGGCCCa -3' miRNA: 3'- cCUCCGGCC-----ACUG-CGU--CCgCACCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 8859 | 0.7 | 0.196772 |
Target: 5'- cGAGcGCCGGcccGACGCcguAGGCGUcacGGUCCc -3' miRNA: 3'- cCUC-CGGCCa--CUGCG---UCCGCA---CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 17416 | 0.69 | 0.228901 |
Target: 5'- uGGAGuCCGGUc-UGCAGGCGaugGGCCa -3' miRNA: 3'- -CCUCcGGCCAcuGCGUCCGCa--CCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 6247 | 0.68 | 0.246569 |
Target: 5'- uGAGGUCaGUGACGCcgaccuccGGGCucugGGCCUg -3' miRNA: 3'- cCUCCGGcCACUGCG--------UCCGca--CCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 7568 | 0.68 | 0.258966 |
Target: 5'- cGAGGCCGGcgGGCGCAu-CGaGGCCg -3' miRNA: 3'- cCUCCGGCCa-CUGCGUccGCaCCGGg -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 45634 | 0.74 | 0.101951 |
Target: 5'- uGGGGcugcugcucacGCCGGccccGGCGCAGGCG-GGUCCa -3' miRNA: 3'- -CCUC-----------CGGCCa---CUGCGUCCGCaCCGGG- -5' |
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18683 | 5' | -62.5 | NC_004682.1 | + | 17452 | 0.66 | 0.37666 |
Target: 5'- -cAGGuuGGUGACGCcgucgaGGGUcugcgagaGGCCCu -3' miRNA: 3'- ccUCCggCCACUGCG------UCCGca------CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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