miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18683 5' -62.5 NC_004682.1 + 1637 0.67 0.292179
Target:  5'- uGAGGCaucuGGUGGCGacccguuGGCGUGGgggaCCg -3'
miRNA:   3'- cCUCCGg---CCACUGCgu-----CCGCACCg---GG- -5'
18683 5' -62.5 NC_004682.1 + 2013 0.66 0.368334
Target:  5'- cGAGGCCGacGGCGCacccguccaGGGUGUcgagGGUCCa -3'
miRNA:   3'- cCUCCGGCcaCUGCG---------UCCGCA----CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 2138 0.66 0.352065
Target:  5'- -cGGGCCGGUcgGACccuGCGGaccagucaguccGCGUGGaCCCu -3'
miRNA:   3'- ccUCCGGCCA--CUG---CGUC------------CGCACC-GGG- -5'
18683 5' -62.5 NC_004682.1 + 2309 0.67 0.292179
Target:  5'- -cGGGCCGGUGGgaccUGCuGGGCcGgugGGUCCg -3'
miRNA:   3'- ccUCCGGCCACU----GCG-UCCG-Ca--CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 2678 0.66 0.336311
Target:  5'- cGAGGaCGG-GACGCcuGCuggacccuGUGGCCCc -3'
miRNA:   3'- cCUCCgGCCaCUGCGucCG--------CACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 4551 0.72 0.144184
Target:  5'- aGGAGaCCGGc--UGguGGUGUGGCCCu -3'
miRNA:   3'- -CCUCcGGCCacuGCguCCGCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 5144 0.68 0.258966
Target:  5'- gGGAGcaGCCGGUGcgGCGUcGGCGUacgcguaGCCCu -3'
miRNA:   3'- -CCUC--CGGCCAC--UGCGuCCGCAc------CGGG- -5'
18683 5' -62.5 NC_004682.1 + 6085 0.67 0.313658
Target:  5'- cGGcGGGCUGGUGAgcCGUuGGCaGaagacgaugcUGGCCCg -3'
miRNA:   3'- -CC-UCCGGCCACU--GCGuCCG-C----------ACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 6247 0.68 0.246569
Target:  5'- uGAGGUCaGUGACGCcgaccuccGGGCucugGGCCUg -3'
miRNA:   3'- cCUCCGGcCACUGCG--------UCCGca--CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 7511 0.67 0.32863
Target:  5'- cGGcGGCgaUGGUGAuccaCGCGgcguGGCGUGGCUUg -3'
miRNA:   3'- -CCuCCG--GCCACU----GCGU----CCGCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 7568 0.68 0.258966
Target:  5'- cGAGGCCGGcgGGCGCAu-CGaGGCCg -3'
miRNA:   3'- cCUCCGGCCa-CUGCGUccGCaCCGGg -5'
18683 5' -62.5 NC_004682.1 + 8859 0.7 0.196772
Target:  5'- cGAGcGCCGGcccGACGCcguAGGCGUcacGGUCCc -3'
miRNA:   3'- cCUC-CGGCCa--CUGCG---UCCGCA---CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 8947 0.7 0.20184
Target:  5'- uGGGGGaCC-GUGACGCcuacGGCGUcgGGCCg -3'
miRNA:   3'- -CCUCC-GGcCACUGCGu---CCGCA--CCGGg -5'
18683 5' -62.5 NC_004682.1 + 10499 1.13 0.0001
Target:  5'- aGGAGGCCGGUGACGCAGGCGUGGCCCa -3'
miRNA:   3'- -CCUCCGGCCACUGCGUCCGCACCGGG- -5'
18683 5' -62.5 NC_004682.1 + 12260 0.7 0.20184
Target:  5'- aGGAucGGCuCGGUGACGUuguccagcaGGGUGccGGUCCa -3'
miRNA:   3'- -CCU--CCG-GCCACUGCG---------UCCGCa-CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 12848 0.69 0.228901
Target:  5'- gGGAGGCCGGUuucggGGCGuCAGcGCGcu-CCCa -3'
miRNA:   3'- -CCUCCGGCCA-----CUGC-GUC-CGCaccGGG- -5'
18683 5' -62.5 NC_004682.1 + 13076 0.69 0.234668
Target:  5'- -cGGGUCGGUGACcuuGguGGCcaGGUCCg -3'
miRNA:   3'- ccUCCGGCCACUG---CguCCGcaCCGGG- -5'
18683 5' -62.5 NC_004682.1 + 17416 0.69 0.228901
Target:  5'- uGGAGuCCGGUc-UGCAGGCGaugGGCCa -3'
miRNA:   3'- -CCUCcGGCCAcuGCGUCCGCa--CCGGg -5'
18683 5' -62.5 NC_004682.1 + 17452 0.66 0.37666
Target:  5'- -cAGGuuGGUGACGCcgucgaGGGUcugcgagaGGCCCu -3'
miRNA:   3'- ccUCCggCCACUGCG------UCCGca------CCGGG- -5'
18683 5' -62.5 NC_004682.1 + 19340 0.68 0.285279
Target:  5'- cGAGGgacUCGGaaUGGCGCaAGGCGUGGgCg -3'
miRNA:   3'- cCUCC---GGCC--ACUGCG-UCCGCACCgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.