miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18710 5' -59 NC_004682.1 + 25215 1.12 0.000264
Target:  5'- aGGCUGUCGGCACCGUACGGCGCGAGCc -3'
miRNA:   3'- -CCGACAGCCGUGGCAUGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 43818 0.77 0.096981
Target:  5'- uGGUuccgGUCGG-GCCGcuacgACGGCGCGAGCg -3'
miRNA:   3'- -CCGa---CAGCCgUGGCa----UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 18267 0.75 0.149898
Target:  5'- uGGCUGUCGGUGCCGcgcagAgGGuCGUcgGAGCa -3'
miRNA:   3'- -CCGACAGCCGUGGCa----UgCC-GCG--CUCG- -5'
18710 5' -59 NC_004682.1 + 34063 0.73 0.185274
Target:  5'- aGGC-GUCcaugccgcaGGCACCGUACGaGCGCaucaccaaaGAGCa -3'
miRNA:   3'- -CCGaCAG---------CCGUGGCAUGC-CGCG---------CUCG- -5'
18710 5' -59 NC_004682.1 + 14941 0.73 0.195203
Target:  5'- aGGCguuccugGUUGuCAUCGUggACGGUGCGAGCg -3'
miRNA:   3'- -CCGa------CAGCcGUGGCA--UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 6336 0.73 0.210425
Target:  5'- cGCUGggucCGGgacucccCGCCGacACGGCGCGGGCg -3'
miRNA:   3'- cCGACa---GCC-------GUGGCa-UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 46328 0.72 0.23368
Target:  5'- uGCUGUCGaaGCgCGUGCGGCccCGAGCc -3'
miRNA:   3'- cCGACAGCcgUG-GCAUGCCGc-GCUCG- -5'
18710 5' -59 NC_004682.1 + 3044 0.71 0.264923
Target:  5'- cGGCacUGUCGGacaaggcagGCCGUccaacggaACgGGCGCGAGCc -3'
miRNA:   3'- -CCG--ACAGCCg--------UGGCA--------UG-CCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 28099 0.7 0.292288
Target:  5'- gGGCg--UGGCugCucGCGGCGgCGAGCg -3'
miRNA:   3'- -CCGacaGCCGugGcaUGCCGC-GCUCG- -5'
18710 5' -59 NC_004682.1 + 2916 0.7 0.299466
Target:  5'- gGGCaG-CGGCG-CGUGCGGCaaGGGCa -3'
miRNA:   3'- -CCGaCaGCCGUgGCAUGCCGcgCUCG- -5'
18710 5' -59 NC_004682.1 + 19333 0.7 0.304571
Target:  5'- uGGCUGUCgagggacucggaauGGCGCaa---GGCGUGGGCg -3'
miRNA:   3'- -CCGACAG--------------CCGUGgcaugCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 16899 0.7 0.30678
Target:  5'- cGGCgcguUCGGUGCCGguguCGGCGCuguGGCg -3'
miRNA:   3'- -CCGac--AGCCGUGGCau--GCCGCGc--UCG- -5'
18710 5' -59 NC_004682.1 + 214 0.7 0.30678
Target:  5'- uGGCccugUGcCGGC-CCGUGcCGGCGguCGAGCc -3'
miRNA:   3'- -CCG----ACaGCCGuGGCAU-GCCGC--GCUCG- -5'
18710 5' -59 NC_004682.1 + 5163 0.7 0.309743
Target:  5'- cGGggGUCGGUgcgggugcgggagcaGCCgGUGCGGCGUcGGCg -3'
miRNA:   3'- -CCgaCAGCCG---------------UGG-CAUGCCGCGcUCG- -5'
18710 5' -59 NC_004682.1 + 38106 0.7 0.314229
Target:  5'- cGCUGUCGGCGCUGaggcaccuCGGCacCGAGg -3'
miRNA:   3'- cCGACAGCCGUGGCau------GCCGc-GCUCg -5'
18710 5' -59 NC_004682.1 + 15859 0.7 0.329536
Target:  5'- cGCUgGUCGcaAUCGUcaacGCGGUGCGAGCa -3'
miRNA:   3'- cCGA-CAGCcgUGGCA----UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 40680 0.69 0.337393
Target:  5'- cGGCacgCGGCACUGcAUGGCuCGGGCc -3'
miRNA:   3'- -CCGacaGCCGUGGCaUGCCGcGCUCG- -5'
18710 5' -59 NC_004682.1 + 11215 0.69 0.349433
Target:  5'- cGGCUGaacgucucgaccuUCGGCuccuggccuugguCCGUcGCGGCGgGGGUa -3'
miRNA:   3'- -CCGAC-------------AGCCGu------------GGCA-UGCCGCgCUCG- -5'
18710 5' -59 NC_004682.1 + 8950 0.69 0.360943
Target:  5'- uGCUGg-GGgACCGUgacgccuACGGCGuCGGGCc -3'
miRNA:   3'- cCGACagCCgUGGCA-------UGCCGC-GCUCG- -5'
18710 5' -59 NC_004682.1 + 4470 0.68 0.387357
Target:  5'- aGCuUGUCGGCACCGcGCuccGCGCccguGGCg -3'
miRNA:   3'- cCG-ACAGCCGUGGCaUGc--CGCGc---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.