miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18710 5' -59 NC_004682.1 + 45483 0.67 0.461093
Target:  5'- cGCUGUCGGCGuugaugccuCCGUGCucaGCGaUGuGCg -3'
miRNA:   3'- cCGACAGCCGU---------GGCAUGc--CGC-GCuCG- -5'
18710 5' -59 NC_004682.1 + 9393 0.68 0.423263
Target:  5'- cGGCUGUCGG-ACCucUACGGCaCGAc- -3'
miRNA:   3'- -CCGACAGCCgUGGc-AUGCCGcGCUcg -5'
18710 5' -59 NC_004682.1 + 2957 0.67 0.432547
Target:  5'- -uCUGg-GGCGCgGgcgGCGGCGCuGGGCa -3'
miRNA:   3'- ccGACagCCGUGgCa--UGCCGCG-CUCG- -5'
18710 5' -59 NC_004682.1 + 4796 0.67 0.432547
Target:  5'- cGGCUGUgGGagcaCAUCGUcCGGUcgaucaacGCGGGCu -3'
miRNA:   3'- -CCGACAgCC----GUGGCAuGCCG--------CGCUCG- -5'
18710 5' -59 NC_004682.1 + 16176 0.67 0.432547
Target:  5'- cGGCgagGUCGGCAU----UGGCGCGAa- -3'
miRNA:   3'- -CCGa--CAGCCGUGgcauGCCGCGCUcg -5'
18710 5' -59 NC_004682.1 + 23660 0.67 0.441949
Target:  5'- gGGcCUG-CGGCccuCC-UGCGGgGCGAGUu -3'
miRNA:   3'- -CC-GACaGCCGu--GGcAUGCCgCGCUCG- -5'
18710 5' -59 NC_004682.1 + 14906 0.67 0.450509
Target:  5'- cGGCgucUCGGCugCGaGCGGCGacccgacCGAGa -3'
miRNA:   3'- -CCGac-AGCCGugGCaUGCCGC-------GCUCg -5'
18710 5' -59 NC_004682.1 + 1998 0.67 0.451465
Target:  5'- cGGCgGUUGGCcccccgagGCCG-ACGGCGCacccguccaGGGUg -3'
miRNA:   3'- -CCGaCAGCCG--------UGGCaUGCCGCG---------CUCG- -5'
18710 5' -59 NC_004682.1 + 29512 0.67 0.461093
Target:  5'- cGUUGUCGGCcaacACCuccUGCGGUacGCGGGUu -3'
miRNA:   3'- cCGACAGCCG----UGGc--AUGCCG--CGCUCG- -5'
18710 5' -59 NC_004682.1 + 45541 0.68 0.4141
Target:  5'- aGUUGgaccCGccuGCGCCGgggcCGGCGUGAGCa -3'
miRNA:   3'- cCGACa---GC---CGUGGCau--GCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 15859 0.7 0.329536
Target:  5'- cGCUgGUCGcaAUCGUcaacGCGGUGCGAGCa -3'
miRNA:   3'- cCGA-CAGCcgUGGCA----UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 16899 0.7 0.30678
Target:  5'- cGGCgcguUCGGUGCCGguguCGGCGCuguGGCg -3'
miRNA:   3'- -CCGac--AGCCGUGGCau--GCCGCGc--UCG- -5'
18710 5' -59 NC_004682.1 + 18267 0.75 0.149898
Target:  5'- uGGCUGUCGGUGCCGcgcagAgGGuCGUcgGAGCa -3'
miRNA:   3'- -CCGACAGCCGUGGCa----UgCC-GCG--CUCG- -5'
18710 5' -59 NC_004682.1 + 14941 0.73 0.195203
Target:  5'- aGGCguuccugGUUGuCAUCGUggACGGUGCGAGCg -3'
miRNA:   3'- -CCGa------CAGCcGUGGCA--UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 6336 0.73 0.210425
Target:  5'- cGCUGggucCGGgacucccCGCCGacACGGCGCGGGCg -3'
miRNA:   3'- cCGACa---GCC-------GUGGCa-UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 46328 0.72 0.23368
Target:  5'- uGCUGUCGaaGCgCGUGCGGCccCGAGCc -3'
miRNA:   3'- cCGACAGCcgUG-GCAUGCCGc-GCUCG- -5'
18710 5' -59 NC_004682.1 + 3044 0.71 0.264923
Target:  5'- cGGCacUGUCGGacaaggcagGCCGUccaacggaACgGGCGCGAGCc -3'
miRNA:   3'- -CCG--ACAGCCg--------UGGCA--------UG-CCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 28099 0.7 0.292288
Target:  5'- gGGCg--UGGCugCucGCGGCGgCGAGCg -3'
miRNA:   3'- -CCGacaGCCGugGcaUGCCGC-GCUCG- -5'
18710 5' -59 NC_004682.1 + 2916 0.7 0.299466
Target:  5'- gGGCaG-CGGCG-CGUGCGGCaaGGGCa -3'
miRNA:   3'- -CCGaCaGCCGUgGCAUGCCGcgCUCG- -5'
18710 5' -59 NC_004682.1 + 19333 0.7 0.304571
Target:  5'- uGGCUGUCgagggacucggaauGGCGCaa---GGCGUGGGCg -3'
miRNA:   3'- -CCGACAG--------------CCGUGgcaugCCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.