miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18710 5' -59 NC_004682.1 + 214 0.7 0.30678
Target:  5'- uGGCccugUGcCGGC-CCGUGcCGGCGguCGAGCc -3'
miRNA:   3'- -CCG----ACaGCCGuGGCAU-GCCGC--GCUCG- -5'
18710 5' -59 NC_004682.1 + 1220 0.67 0.451465
Target:  5'- aGGCUGcUCaGCAUCGaguugACGGUgGUGAGUa -3'
miRNA:   3'- -CCGAC-AGcCGUGGCa----UGCCG-CGCUCG- -5'
18710 5' -59 NC_004682.1 + 1998 0.67 0.451465
Target:  5'- cGGCgGUUGGCcccccgagGCCG-ACGGCGCacccguccaGGGUg -3'
miRNA:   3'- -CCGaCAGCCG--------UGGCaUGCCGCG---------CUCG- -5'
18710 5' -59 NC_004682.1 + 2916 0.7 0.299466
Target:  5'- gGGCaG-CGGCG-CGUGCGGCaaGGGCa -3'
miRNA:   3'- -CCGaCaGCCGUgGCAUGCCGcgCUCG- -5'
18710 5' -59 NC_004682.1 + 2957 0.67 0.432547
Target:  5'- -uCUGg-GGCGCgGgcgGCGGCGCuGGGCa -3'
miRNA:   3'- ccGACagCCGUGgCa--UGCCGCG-CUCG- -5'
18710 5' -59 NC_004682.1 + 3044 0.71 0.264923
Target:  5'- cGGCacUGUCGGacaaggcagGCCGUccaacggaACgGGCGCGAGCc -3'
miRNA:   3'- -CCG--ACAGCCg--------UGGCA--------UG-CCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 3230 0.67 0.474751
Target:  5'- cGGCg--CGGCACagggcgacaucgGCGGCGCaGGCa -3'
miRNA:   3'- -CCGacaGCCGUGgca---------UGCCGCGcUCG- -5'
18710 5' -59 NC_004682.1 + 4470 0.68 0.387357
Target:  5'- aGCuUGUCGGCACCGcGCuccGCGCccguGGCg -3'
miRNA:   3'- cCG-ACAGCCGUGGCaUGc--CGCGc---UCG- -5'
18710 5' -59 NC_004682.1 + 4796 0.67 0.432547
Target:  5'- cGGCUGUgGGagcaCAUCGUcCGGUcgaucaacGCGGGCu -3'
miRNA:   3'- -CCGACAgCC----GUGGCAuGCCG--------CGCUCG- -5'
18710 5' -59 NC_004682.1 + 5046 0.66 0.541601
Target:  5'- cGCUGUCGGCGauCCagACcGCcCGAGCa -3'
miRNA:   3'- cCGACAGCCGU--GGcaUGcCGcGCUCG- -5'
18710 5' -59 NC_004682.1 + 5163 0.7 0.309743
Target:  5'- cGGggGUCGGUgcgggugcgggagcaGCCgGUGCGGCGUcGGCg -3'
miRNA:   3'- -CCgaCAGCCG---------------UGG-CAUGCCGCGcUCG- -5'
18710 5' -59 NC_004682.1 + 6336 0.73 0.210425
Target:  5'- cGCUGggucCGGgacucccCGCCGacACGGCGCGGGCg -3'
miRNA:   3'- cCGACa---GCC-------GUGGCa-UGCCGCGCUCG- -5'
18710 5' -59 NC_004682.1 + 7160 0.66 0.510756
Target:  5'- gGGCguccugaacugGUgGGCugCGUAcgucaagaccccCGGCgGUGAGCa -3'
miRNA:   3'- -CCGa----------CAgCCGugGCAU------------GCCG-CGCUCG- -5'
18710 5' -59 NC_004682.1 + 7518 0.68 0.403266
Target:  5'- uGGCUGaCGGCGgCGauggugauccacGCGGCGUG-GCg -3'
miRNA:   3'- -CCGACaGCCGUgGCa-----------UGCCGCGCuCG- -5'
18710 5' -59 NC_004682.1 + 8950 0.69 0.360943
Target:  5'- uGCUGg-GGgACCGUgacgccuACGGCGuCGGGCc -3'
miRNA:   3'- cCGACagCCgUGGCA-------UGCCGC-GCUCG- -5'
18710 5' -59 NC_004682.1 + 9393 0.68 0.423263
Target:  5'- cGGCUGUCGG-ACCucUACGGCaCGAc- -3'
miRNA:   3'- -CCGACAGCCgUGGc-AUGCCGcGCUcg -5'
18710 5' -59 NC_004682.1 + 11215 0.69 0.349433
Target:  5'- cGGCUGaacgucucgaccuUCGGCuccuggccuugguCCGUcGCGGCGgGGGUa -3'
miRNA:   3'- -CCGAC-------------AGCCGu------------GGCA-UGCCGCgCUCG- -5'
18710 5' -59 NC_004682.1 + 12337 0.66 0.520961
Target:  5'- cGGCaccGUUGGCaACCGcgugguCGGCGUcauGGGCg -3'
miRNA:   3'- -CCGa--CAGCCG-UGGCau----GCCGCG---CUCG- -5'
18710 5' -59 NC_004682.1 + 14906 0.67 0.450509
Target:  5'- cGGCgucUCGGCugCGaGCGGCGacccgacCGAGa -3'
miRNA:   3'- -CCGac-AGCCGugGCaUGCCGC-------GCUCg -5'
18710 5' -59 NC_004682.1 + 14941 0.73 0.195203
Target:  5'- aGGCguuccugGUUGuCAUCGUggACGGUGCGAGCg -3'
miRNA:   3'- -CCGa------CAGCcGUGGCA--UGCCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.