miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18730 3' -62.1 NC_004682.1 + 34611 1.1 0.000191
Target:  5'- aCGACGCCACGCCGAGGUGGCCCACGCc -3'
miRNA:   3'- -GCUGCGGUGCGGCUCCACCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 37208 0.78 0.055483
Target:  5'- --uCGCCGCGCCGAGGgccgugcuGCCCGCGUu -3'
miRNA:   3'- gcuGCGGUGCGGCUCCac------CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 47848 0.76 0.072889
Target:  5'- uCGACGCCGCGUCGgaGGGUGacggaguuccacuGCCCAgCGCc -3'
miRNA:   3'- -GCUGCGGUGCGGC--UCCAC-------------CGGGU-GCG- -5'
18730 3' -62.1 NC_004682.1 + 4868 0.76 0.075121
Target:  5'- uCGAacaaGCCACGCgGAgugaagggcucGGUGaGCCCGCGCu -3'
miRNA:   3'- -GCUg---CGGUGCGgCU-----------CCAC-CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 5117 0.75 0.093428
Target:  5'- uCGACGCCGCGCCGAuccUGGCgCGUGCu -3'
miRNA:   3'- -GCUGCGGUGCGGCUcc-ACCGgGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 13835 0.74 0.102982
Target:  5'- gCGAgGCCGgaagGCCGAGGccaaccuggcacaGGCCCGCGCa -3'
miRNA:   3'- -GCUgCGGUg---CGGCUCCa------------CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 5271 0.73 0.132428
Target:  5'- --uCGCCGCGCUGGGGcUGcuGCUCACGCc -3'
miRNA:   3'- gcuGCGGUGCGGCUCC-AC--CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 30394 0.73 0.132428
Target:  5'- uGGCGCucagccgcugCACGCCGGGGUaGGCCCGg-- -3'
miRNA:   3'- gCUGCG----------GUGCGGCUCCA-CCGGGUgcg -5'
18730 3' -62.1 NC_004682.1 + 19854 0.71 0.167716
Target:  5'- cCGaAUGCCugGCCucaucGGUGGCCUGCGg -3'
miRNA:   3'- -GC-UGCGGugCGGcu---CCACCGGGUGCg -5'
18730 3' -62.1 NC_004682.1 + 34779 0.71 0.185958
Target:  5'- aCGcCGCCAgGuuGAcGUGGCCCAgGUu -3'
miRNA:   3'- -GCuGCGGUgCggCUcCACCGGGUgCG- -5'
18730 3' -62.1 NC_004682.1 + 14232 0.7 0.216592
Target:  5'- -aACGUCAgGCgCGucGGUGGUCCACGUc -3'
miRNA:   3'- gcUGCGGUgCG-GCu-CCACCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 3002 0.7 0.222099
Target:  5'- cCGACGCgGCGUCGAcaucccGUGGUCagcaACGCa -3'
miRNA:   3'- -GCUGCGgUGCGGCUc-----CACCGGg---UGCG- -5'
18730 3' -62.1 NC_004682.1 + 41977 0.69 0.227726
Target:  5'- uGACGCCuACGgCGucG-GGCCgGCGCu -3'
miRNA:   3'- gCUGCGG-UGCgGCucCaCCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 44727 0.69 0.227726
Target:  5'- -cAUGCCgACGCCGccGGUGGCC-ACGUa -3'
miRNA:   3'- gcUGCGG-UGCGGCu-CCACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 6897 0.69 0.227726
Target:  5'- -aGCGuCCGCucaCCGAGGgcaucgcaaUGGCCCugGCg -3'
miRNA:   3'- gcUGC-GGUGc--GGCUCC---------ACCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 25848 0.69 0.233472
Target:  5'- -uGCGCCGCucguCCGGGGUgcuGGCCUugGUc -3'
miRNA:   3'- gcUGCGGUGc---GGCUCCA---CCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 28488 0.69 0.241722
Target:  5'- gGAUGggucaCCGCGCCGAcaccugcgaaGGUGggcauguugcggagaGCCCACGCg -3'
miRNA:   3'- gCUGC-----GGUGCGGCU----------CCAC---------------CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 7429 0.69 0.245331
Target:  5'- -cACGCCACGCCGc-GUGGaucaCCAuCGCc -3'
miRNA:   3'- gcUGCGGUGCGGCucCACCg---GGU-GCG- -5'
18730 3' -62.1 NC_004682.1 + 44564 0.69 0.245331
Target:  5'- aGAUGCCGCuuucccGCUcuucgGGGGUGGCCUcaACGUa -3'
miRNA:   3'- gCUGCGGUG------CGG-----CUCCACCGGG--UGCG- -5'
18730 3' -62.1 NC_004682.1 + 38985 0.69 0.257685
Target:  5'- uCGACGCCGaaggcgucucauCGCCGuGGaacgGGCaCCugGUc -3'
miRNA:   3'- -GCUGCGGU------------GCGGCuCCa---CCG-GGugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.