miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18730 3' -62.1 NC_004682.1 + 39292 0.67 0.342591
Target:  5'- aCGAUGCCuguuuCGUgGucGUGGUCgACGCu -3'
miRNA:   3'- -GCUGCGGu----GCGgCucCACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 25848 0.69 0.233472
Target:  5'- -uGCGCCGCucguCCGGGGUgcuGGCCUugGUc -3'
miRNA:   3'- gcUGCGGUGc---GGCUCCA---CCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 7429 0.69 0.245331
Target:  5'- -cACGCCACGCCGc-GUGGaucaCCAuCGCc -3'
miRNA:   3'- gcUGCGGUGCGGCucCACCg---GGU-GCG- -5'
18730 3' -62.1 NC_004682.1 + 44564 0.69 0.245331
Target:  5'- aGAUGCCGCuuucccGCUcuucgGGGGUGGCCUcaACGUa -3'
miRNA:   3'- gCUGCGGUG------CGG-----CUCCACCGGG--UGCG- -5'
18730 3' -62.1 NC_004682.1 + 38985 0.69 0.257685
Target:  5'- uCGACGCCGaaggcgucucauCGCCGuGGaacgGGCaCCugGUc -3'
miRNA:   3'- -GCUGCGGU------------GCGGCuCCa---CCG-GGugCG- -5'
18730 3' -62.1 NC_004682.1 + 32977 0.68 0.264051
Target:  5'- aGaACGUCGCGCUGgcgugcuccAGGacgcucucaUGGCCCACGUc -3'
miRNA:   3'- gC-UGCGGUGCGGC---------UCC---------ACCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 27688 0.68 0.270543
Target:  5'- gCGGCGauCC-CGCCGcuGUGGCuCCugGCc -3'
miRNA:   3'- -GCUGC--GGuGCGGCucCACCG-GGugCG- -5'
18730 3' -62.1 NC_004682.1 + 2021 0.68 0.277164
Target:  5'- aCGGCGCaCcCGUCcAGGgugucgagGGUCCACGCg -3'
miRNA:   3'- -GCUGCG-GuGCGGcUCCa-------CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 38017 0.67 0.334799
Target:  5'- -aGCGCCuccucggUGCCGAGGUG-CCUcaGCGCc -3'
miRNA:   3'- gcUGCGGu------GCGGCUCCACcGGG--UGCG- -5'
18730 3' -62.1 NC_004682.1 + 6897 0.69 0.227726
Target:  5'- -aGCGuCCGCucaCCGAGGgcaucgcaaUGGCCCugGCg -3'
miRNA:   3'- gcUGC-GGUGc--GGCUCC---------ACCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 44727 0.69 0.227726
Target:  5'- -cAUGCCgACGCCGccGGUGGCC-ACGUa -3'
miRNA:   3'- gcUGCGG-UGCGGCu-CCACCGGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 3002 0.7 0.222099
Target:  5'- cCGACGCgGCGUCGAcaucccGUGGUCagcaACGCa -3'
miRNA:   3'- -GCUGCGgUGCGGCUc-----CACCGGg---UGCG- -5'
18730 3' -62.1 NC_004682.1 + 37208 0.78 0.055483
Target:  5'- --uCGCCGCGCCGAGGgccgugcuGCCCGCGUu -3'
miRNA:   3'- gcuGCGGUGCGGCUCCac------CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 4868 0.76 0.075121
Target:  5'- uCGAacaaGCCACGCgGAgugaagggcucGGUGaGCCCGCGCu -3'
miRNA:   3'- -GCUg---CGGUGCGgCU-----------CCAC-CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 5117 0.75 0.093428
Target:  5'- uCGACGCCGCGCCGAuccUGGCgCGUGCu -3'
miRNA:   3'- -GCUGCGGUGCGGCUcc-ACCGgGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 13835 0.74 0.102982
Target:  5'- gCGAgGCCGgaagGCCGAGGccaaccuggcacaGGCCCGCGCa -3'
miRNA:   3'- -GCUgCGGUg---CGGCUCCa------------CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 30394 0.73 0.132428
Target:  5'- uGGCGCucagccgcugCACGCCGGGGUaGGCCCGg-- -3'
miRNA:   3'- gCUGCG----------GUGCGGCUCCA-CCGGGUgcg -5'
18730 3' -62.1 NC_004682.1 + 19854 0.71 0.167716
Target:  5'- cCGaAUGCCugGCCucaucGGUGGCCUGCGg -3'
miRNA:   3'- -GC-UGCGGugCGGcu---CCACCGGGUGCg -5'
18730 3' -62.1 NC_004682.1 + 34779 0.71 0.185958
Target:  5'- aCGcCGCCAgGuuGAcGUGGCCCAgGUu -3'
miRNA:   3'- -GCuGCGGUgCggCUcCACCGGGUgCG- -5'
18730 3' -62.1 NC_004682.1 + 14232 0.7 0.216592
Target:  5'- -aACGUCAgGCgCGucGGUGGUCCACGUc -3'
miRNA:   3'- gcUGCGGUgCG-GCu-CCACCGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.