miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18730 3' -62.1 NC_004682.1 + 2021 0.68 0.277164
Target:  5'- aCGGCGCaCcCGUCcAGGgugucgagGGUCCACGCg -3'
miRNA:   3'- -GCUGCG-GuGCGGcUCCa-------CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 3002 0.7 0.222099
Target:  5'- cCGACGCgGCGUCGAcaucccGUGGUCagcaACGCa -3'
miRNA:   3'- -GCUGCGgUGCGGCUc-----CACCGGg---UGCG- -5'
18730 3' -62.1 NC_004682.1 + 3881 0.66 0.37505
Target:  5'- -uGCGCCACGCgGAGGaugucgUGGgC-ACGCc -3'
miRNA:   3'- gcUGCGGUGCGgCUCC------ACCgGgUGCG- -5'
18730 3' -62.1 NC_004682.1 + 4231 0.66 0.350512
Target:  5'- -uGCGCCugGUCGAGaacGUGcGUCC-CGCu -3'
miRNA:   3'- gcUGCGGugCGGCUC---CAC-CGGGuGCG- -5'
18730 3' -62.1 NC_004682.1 + 4868 0.76 0.075121
Target:  5'- uCGAacaaGCCACGCgGAgugaagggcucGGUGaGCCCGCGCu -3'
miRNA:   3'- -GCUg---CGGUGCGgCU-----------CCAC-CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 5117 0.75 0.093428
Target:  5'- uCGACGCCGCGCCGAuccUGGCgCGUGCu -3'
miRNA:   3'- -GCUGCGGUGCGGCUcc-ACCGgGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 5271 0.73 0.132428
Target:  5'- --uCGCCGCGCUGGGGcUGcuGCUCACGCc -3'
miRNA:   3'- gcuGCGGUGCGGCUCC-AC--CGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 6072 0.66 0.400723
Target:  5'- aCGACGCCAauacCGgCGGgcuGGUGaGCCgUugGCa -3'
miRNA:   3'- -GCUGCGGU----GCgGCU---CCAC-CGG-GugCG- -5'
18730 3' -62.1 NC_004682.1 + 6897 0.69 0.227726
Target:  5'- -aGCGuCCGCucaCCGAGGgcaucgcaaUGGCCCugGCg -3'
miRNA:   3'- gcUGC-GGUGc--GGCUCC---------ACCGGGugCG- -5'
18730 3' -62.1 NC_004682.1 + 7429 0.69 0.245331
Target:  5'- -cACGCCACGCCGc-GUGGaucaCCAuCGCc -3'
miRNA:   3'- gcUGCGGUGCGGCucCACCg---GGU-GCG- -5'
18730 3' -62.1 NC_004682.1 + 8342 0.66 0.400723
Target:  5'- uGAucCGUCuguucgACGCUGAGGUGGCCgCAgGg -3'
miRNA:   3'- gCU--GCGG------UGCGGCUCCACCGG-GUgCg -5'
18730 3' -62.1 NC_004682.1 + 10813 0.67 0.327138
Target:  5'- gCGAUcaaGCUACGgucggccaCCGAGGgccucGGCCuCGCGCa -3'
miRNA:   3'- -GCUG---CGGUGC--------GGCUCCa----CCGG-GUGCG- -5'
18730 3' -62.1 NC_004682.1 + 13835 0.74 0.102982
Target:  5'- gCGAgGCCGgaagGCCGAGGccaaccuggcacaGGCCCGCGCa -3'
miRNA:   3'- -GCUgCGGUg---CGGCUCCa------------CCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 14232 0.7 0.216592
Target:  5'- -aACGUCAgGCgCGucGGUGGUCCACGUc -3'
miRNA:   3'- gcUGCGGUgCG-GCu-CCACCGGGUGCG- -5'
18730 3' -62.1 NC_004682.1 + 15386 0.66 0.37505
Target:  5'- -cGCGCCGCGaaGAGGUGuuCCA-GCu -3'
miRNA:   3'- gcUGCGGUGCggCUCCACcgGGUgCG- -5'
18730 3' -62.1 NC_004682.1 + 15703 0.67 0.319607
Target:  5'- aGAuCGaCCACGCCaucgcgcagugcGuGGUGGCCgGCGg -3'
miRNA:   3'- gCU-GC-GGUGCGG------------CuCCACCGGgUGCg -5'
18730 3' -62.1 NC_004682.1 + 17376 0.67 0.304938
Target:  5'- aCGGCGgCA-GCCGGGGUGGuggcaCCCagaggcagucgaACGCg -3'
miRNA:   3'- -GCUGCgGUgCGGCUCCACC-----GGG------------UGCG- -5'
18730 3' -62.1 NC_004682.1 + 18094 0.66 0.363456
Target:  5'- aCGACGaacucgucaccauCUACGCCGAggccGGUcugggucggaagaaGGCCCGCGa -3'
miRNA:   3'- -GCUGC-------------GGUGCGGCU----CCA--------------CCGGGUGCg -5'
18730 3' -62.1 NC_004682.1 + 19455 0.67 0.302783
Target:  5'- uCGACGCCAacguCGCCGAGaacgucaagacccuGaUGGCCacaCugGCa -3'
miRNA:   3'- -GCUGCGGU----GCGGCUC--------------C-ACCGG---GugCG- -5'
18730 3' -62.1 NC_004682.1 + 19854 0.71 0.167716
Target:  5'- cCGaAUGCCugGCCucaucGGUGGCCUGCGg -3'
miRNA:   3'- -GC-UGCGGugCGGcu---CCACCGGGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.