miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18734 5' -55.6 NC_004682.1 + 32109 0.66 0.709965
Target:  5'- -gUUCGUcGAUGCGCUgcUGGagggcugccuuCGCGGCCu -3'
miRNA:   3'- agGAGCAuCUACGCGA--GCU-----------GCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 48172 0.66 0.709965
Target:  5'- cCUUCGgGGAcaGCGCgUCGuAgGCAGCCu -3'
miRNA:   3'- aGGAGCaUCUa-CGCG-AGC-UgCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 39832 0.66 0.709964
Target:  5'- gCCUCGgc--UGCGCUCuuGC-CAGCCg -3'
miRNA:   3'- aGGAGCaucuACGCGAGc-UGcGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 16792 0.66 0.698104
Target:  5'- uUCCUCGgccugacccguaUGGGUugguuggucacagGCGUcuUCGugGCGGCUg -3'
miRNA:   3'- -AGGAGC------------AUCUA-------------CGCG--AGCugCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 41002 0.66 0.688342
Target:  5'- aCCUUGUAGGccacGCGCaUCGcuugcucccacGCGCcGCCg -3'
miRNA:   3'- aGGAGCAUCUa---CGCG-AGC-----------UGCGuCGG- -5'
18734 5' -55.6 NC_004682.1 + 27557 0.66 0.688342
Target:  5'- cUCCuUCGauccgcucGAUGCGCUCcgucCGCAGCUc -3'
miRNA:   3'- -AGG-AGCau------CUACGCGAGcu--GCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 21668 0.66 0.688341
Target:  5'- -aCUCGgcGAUgGCGUcccUCGGUGCAGUCg -3'
miRNA:   3'- agGAGCauCUA-CGCG---AGCUGCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 35923 0.66 0.655529
Target:  5'- cUUCUCGUcGGGU-CGC-CGcuCGCAGCCg -3'
miRNA:   3'- -AGGAGCA-UCUAcGCGaGCu-GCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 44957 0.67 0.643435
Target:  5'- gCCgUCGcgAGcaacGCGCUCGACGUacucaacAGCCa -3'
miRNA:   3'- aGG-AGCa-UCua--CGCGAGCUGCG-------UCGG- -5'
18734 5' -55.6 NC_004682.1 + 41322 0.67 0.633529
Target:  5'- cUCCUCGcccuUGaCGC-CGAacaGCAGCCg -3'
miRNA:   3'- -AGGAGCaucuAC-GCGaGCUg--CGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 23607 0.67 0.622521
Target:  5'- aCUUCGccGAUGuCGCuUCGGCgGUGGCCa -3'
miRNA:   3'- aGGAGCauCUAC-GCG-AGCUG-CGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 28078 0.67 0.611522
Target:  5'- cCCUCGgcGAcgaaGaCGCUCGGgCGUGGCUg -3'
miRNA:   3'- aGGAGCauCUa---C-GCGAGCU-GCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 4619 0.67 0.600541
Target:  5'- aCUUCGUGGAgGUGUggGGCGaCGGCUa -3'
miRNA:   3'- aGGAGCAUCUaCGCGagCUGC-GUCGG- -5'
18734 5' -55.6 NC_004682.1 + 26637 0.67 0.600541
Target:  5'- aUCCUgGgcGAUGCGgaugaaCGAC-CAGCCg -3'
miRNA:   3'- -AGGAgCauCUACGCga----GCUGcGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 10687 0.67 0.589587
Target:  5'- gUCCUggCGgcGAUcCuGCUCGAUGCuGCCg -3'
miRNA:   3'- -AGGA--GCauCUAcG-CGAGCUGCGuCGG- -5'
18734 5' -55.6 NC_004682.1 + 39301 0.68 0.567795
Target:  5'- gUUUCGUGGucGUGgUCGACGCugAGCCg -3'
miRNA:   3'- aGGAGCAUCuaCGCgAGCUGCG--UCGG- -5'
18734 5' -55.6 NC_004682.1 + 31322 0.68 0.535517
Target:  5'- gUCCUCGUaccagaacGGGU-CGCcugCGAUGCAGaCCa -3'
miRNA:   3'- -AGGAGCA--------UCUAcGCGa--GCUGCGUC-GG- -5'
18734 5' -55.6 NC_004682.1 + 14883 0.68 0.535517
Target:  5'- gCCUCGaccacgccuGGUGUGUUCGGCGUcucGGCUg -3'
miRNA:   3'- aGGAGCau-------CUACGCGAGCUGCG---UCGG- -5'
18734 5' -55.6 NC_004682.1 + 48896 0.69 0.524897
Target:  5'- gCUUCGggccuUGCGCUUGuCGCAGUCc -3'
miRNA:   3'- aGGAGCaucu-ACGCGAGCuGCGUCGG- -5'
18734 5' -55.6 NC_004682.1 + 32198 0.69 0.493547
Target:  5'- cUUCUUGcGGuUGuCGCUCuGCGCGGCCa -3'
miRNA:   3'- -AGGAGCaUCuAC-GCGAGcUGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.