miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18742 5' -54.4 NC_004682.1 + 1414 0.65 0.776822
Target:  5'- cUUCGACACCccggcugaggcugAAGCCUUCGcUCG-GGAGc -3'
miRNA:   3'- -AGGUUGUGG-------------UUUGGGAGC-AGCgCCUC- -5'
18742 5' -54.4 NC_004682.1 + 22066 0.66 0.767689
Target:  5'- uUCCGAUcCCGGACaCCgUGuUCGUGGAGc -3'
miRNA:   3'- -AGGUUGuGGUUUG-GGaGC-AGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 42419 0.66 0.757408
Target:  5'- gCCAACgagggaucacagGCCGAACuCCUCGUgGUacauGGGGa -3'
miRNA:   3'- aGGUUG------------UGGUUUG-GGAGCAgCG----CCUC- -5'
18742 5' -54.4 NC_004682.1 + 23654 0.66 0.757408
Target:  5'- aCCGACggGCCugcGGCCCUCc-UGCGGGGc -3'
miRNA:   3'- aGGUUG--UGGu--UUGGGAGcaGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 31743 0.66 0.757408
Target:  5'- gUCCGAggaaGCCcagauGAGCCCggacgaaGUCGCGGAa -3'
miRNA:   3'- -AGGUUg---UGG-----UUUGGGag-----CAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 21310 0.66 0.736469
Target:  5'- aCCAu--CCAAACCCgCGUacCGCaGGAGg -3'
miRNA:   3'- aGGUuguGGUUUGGGaGCA--GCG-CCUC- -5'
18742 5' -54.4 NC_004682.1 + 18520 0.66 0.725834
Target:  5'- -gCAGaGCCAGAUggCCUCGcUCGCGGAc -3'
miRNA:   3'- agGUUgUGGUUUG--GGAGC-AGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 35271 0.67 0.715104
Target:  5'- gUCAACGCgAGG---UCGUCGCGGAGu -3'
miRNA:   3'- aGGUUGUGgUUUgggAGCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 28976 0.67 0.715104
Target:  5'- cUCGAC-CC-AACCCUCGUaguaGUGGAa -3'
miRNA:   3'- aGGUUGuGGuUUGGGAGCAg---CGCCUc -5'
18742 5' -54.4 NC_004682.1 + 43322 0.67 0.715104
Target:  5'- uUCCAGuuCGCgGaacuucuccgcGACCCUC-UCGCGGGGc -3'
miRNA:   3'- -AGGUU--GUGgU-----------UUGGGAGcAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 24026 0.67 0.704291
Target:  5'- gUCCcGCGCCAggGACUCgcaccgCGUgcUGCGGGGg -3'
miRNA:   3'- -AGGuUGUGGU--UUGGGa-----GCA--GCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 15945 0.67 0.703206
Target:  5'- gCCAACGgCGAGCCgggguucuggaCUCGUCGCuguccaacgucggGGAGc -3'
miRNA:   3'- aGGUUGUgGUUUGG-----------GAGCAGCG-------------CCUC- -5'
18742 5' -54.4 NC_004682.1 + 17784 0.67 0.682463
Target:  5'- cUUCAGCcguCCGAACCC-CGgcaCGCGGGa -3'
miRNA:   3'- -AGGUUGu--GGUUUGGGaGCa--GCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 44482 0.67 0.682463
Target:  5'- gUCgAGCACC--GCCCgcgccgUGUCGgCGGGGa -3'
miRNA:   3'- -AGgUUGUGGuuUGGGa-----GCAGC-GCCUC- -5'
18742 5' -54.4 NC_004682.1 + 31579 0.67 0.682463
Target:  5'- --gAGCACgAAcCCCUugaCGUUGCGGAGa -3'
miRNA:   3'- aggUUGUGgUUuGGGA---GCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 42304 0.68 0.66044
Target:  5'- cUUCAGCACCGggUUgcCGUCGUGGAa -3'
miRNA:   3'- -AGGUUGUGGUuuGGgaGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 30693 0.68 0.649383
Target:  5'- aCUGAgGCCAucaauuGGCCCUCGUCGgccaGGAa -3'
miRNA:   3'- aGGUUgUGGU------UUGGGAGCAGCg---CCUc -5'
18742 5' -54.4 NC_004682.1 + 14423 0.68 0.648276
Target:  5'- gCCGAgACCAAguccgaggaggacGCgCUUCGUCGUGGGa -3'
miRNA:   3'- aGGUUgUGGUU-------------UG-GGAGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 44903 0.68 0.63831
Target:  5'- gCCAGCGCC--GCCCUUGcCGUcGAGc -3'
miRNA:   3'- aGGUUGUGGuuUGGGAGCaGCGcCUC- -5'
18742 5' -54.4 NC_004682.1 + 10273 0.68 0.616157
Target:  5'- gCCAAUcCCGcGCUCUcCGUUGCGGAa -3'
miRNA:   3'- aGGUUGuGGUuUGGGA-GCAGCGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.