Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18742 | 5' | -54.4 | NC_004682.1 | + | 44903 | 0.68 | 0.63831 |
Target: 5'- gCCAGCGCC--GCCCUUGcCGUcGAGc -3' miRNA: 3'- aGGUUGUGGuuUGGGAGCaGCGcCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 44658 | 1.08 | 0.001348 |
Target: 5'- cUCCAACACCAAACCCUCGUCGCGGAGc -3' miRNA: 3'- -AGGUUGUGGUUUGGGAGCAGCGCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 44482 | 0.67 | 0.682463 |
Target: 5'- gUCgAGCACC--GCCCgcgccgUGUCGgCGGGGa -3' miRNA: 3'- -AGgUUGUGGuuUGGGa-----GCAGC-GCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 43931 | 0.72 | 0.426978 |
Target: 5'- gCCAGgGCCAuugcgauGCCCUCGgugaGCGGAc -3' miRNA: 3'- aGGUUgUGGUu------UGGGAGCag--CGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 43322 | 0.67 | 0.715104 |
Target: 5'- uUCCAGuuCGCgGaacuucuccgcGACCCUC-UCGCGGGGc -3' miRNA: 3'- -AGGUU--GUGgU-----------UUGGGAGcAGCGCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 42419 | 0.66 | 0.757408 |
Target: 5'- gCCAACgagggaucacagGCCGAACuCCUCGUgGUacauGGGGa -3' miRNA: 3'- aGGUUG------------UGGUUUG-GGAGCAgCG----CCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 42304 | 0.68 | 0.66044 |
Target: 5'- cUUCAGCACCGggUUgcCGUCGUGGAa -3' miRNA: 3'- -AGGUUGUGGUuuGGgaGCAGCGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 36321 | 0.69 | 0.561182 |
Target: 5'- aCUGGCgaguGCCAgGGCCgUCGUCGCGGGu -3' miRNA: 3'- aGGUUG----UGGU-UUGGgAGCAGCGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 35396 | 0.68 | 0.616157 |
Target: 5'- gUCCucuucgcGCugCuuGCCCUCGUCGUccuucgcgauGGAGu -3' miRNA: 3'- -AGGu------UGugGuuUGGGAGCAGCG----------CCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 35271 | 0.67 | 0.715104 |
Target: 5'- gUCAACGCgAGG---UCGUCGCGGAGu -3' miRNA: 3'- aGGUUGUGgUUUgggAGCAGCGCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 31743 | 0.66 | 0.757408 |
Target: 5'- gUCCGAggaaGCCcagauGAGCCCggacgaaGUCGCGGAa -3' miRNA: 3'- -AGGUUg---UGG-----UUUGGGag-----CAGCGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 31579 | 0.67 | 0.682463 |
Target: 5'- --gAGCACgAAcCCCUugaCGUUGCGGAGa -3' miRNA: 3'- aggUUGUGgUUuGGGA---GCAGCGCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 31049 | 0.76 | 0.249537 |
Target: 5'- gUCCGGgACCGu-CCagaUCGUCGCGGGGg -3' miRNA: 3'- -AGGUUgUGGUuuGGg--AGCAGCGCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 30693 | 0.68 | 0.649383 |
Target: 5'- aCUGAgGCCAucaauuGGCCCUCGUCGgccaGGAa -3' miRNA: 3'- aGGUUgUGGU------UUGGGAGCAGCg---CCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 30183 | 0.81 | 0.116203 |
Target: 5'- aCCGACGCCAGGaUCUCGUCGUGGAu -3' miRNA: 3'- aGGUUGUGGUUUgGGAGCAGCGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 28976 | 0.67 | 0.715104 |
Target: 5'- cUCGAC-CC-AACCCUCGUaguaGUGGAa -3' miRNA: 3'- aGGUUGuGGuUUGGGAGCAg---CGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 26907 | 0.72 | 0.39874 |
Target: 5'- cUCCAGCGacCCGGAgcggUCCUUGUCGCGGuAGu -3' miRNA: 3'- -AGGUUGU--GGUUU----GGGAGCAGCGCC-UC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 26257 | 0.7 | 0.486811 |
Target: 5'- -aCGACACCAGcACCg-CGuUCGCGGGGa -3' miRNA: 3'- agGUUGUGGUU-UGGgaGC-AGCGCCUC- -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 24496 | 0.68 | 0.605097 |
Target: 5'- aCCGACACCGcuggcaucAGCCaggUCGgCGCGGAc -3' miRNA: 3'- aGGUUGUGGU--------UUGGg--AGCaGCGCCUc -5' |
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18742 | 5' | -54.4 | NC_004682.1 | + | 24026 | 0.67 | 0.704291 |
Target: 5'- gUCCcGCGCCAggGACUCgcaccgCGUgcUGCGGGGg -3' miRNA: 3'- -AGGuUGUGGU--UUGGGa-----GCA--GCGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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