miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18743 3' -59.8 NC_004682.1 + 46139 1.12 0.000204
Target:  5'- aGCGCCGAGCGACAGCAGCACCGAGGCc -3'
miRNA:   3'- -CGCGGCUCGCUGUCGUCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 16673 0.77 0.081749
Target:  5'- uGCGCuCGGGCGGCAGCGGUgauggGCCuggaGGGCu -3'
miRNA:   3'- -CGCG-GCUCGCUGUCGUCG-----UGGc---UCCG- -5'
18743 3' -59.8 NC_004682.1 + 35237 0.77 0.08644
Target:  5'- --uCCGAGCcaacGGCAGCGGCcCCGAGGCc -3'
miRNA:   3'- cgcGGCUCG----CUGUCGUCGuGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 10129 0.75 0.117147
Target:  5'- -aGCCGAGUGggacgagcACGGCAagcGCGCCGGGGUc -3'
miRNA:   3'- cgCGGCUCGC--------UGUCGU---CGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 17361 0.74 0.137931
Target:  5'- cCGCUGgcGGCGGCaacGGCGGCAgCCGGGGUg -3'
miRNA:   3'- cGCGGC--UCGCUG---UCGUCGU-GGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 46273 0.73 0.166423
Target:  5'- aGCGcCCGAGCGAacGCGGCGuuGcGGCc -3'
miRNA:   3'- -CGC-GGCUCGCUguCGUCGUggCuCCG- -5'
18743 3' -59.8 NC_004682.1 + 18045 0.73 0.170901
Target:  5'- cGCGCCaagGAGCuucucgaagaGAucCAGCacgccAGCGCCGAGGCg -3'
miRNA:   3'- -CGCGG---CUCG----------CU--GUCG-----UCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 45554 0.73 0.175486
Target:  5'- uGCGCCGgggccGGCGugAGCAGCAgCCccagcgcGGCg -3'
miRNA:   3'- -CGCGGC-----UCGCugUCGUCGU-GGcu-----CCG- -5'
18743 3' -59.8 NC_004682.1 + 32844 0.72 0.180181
Target:  5'- cCGCCuGAGCGAaGGCcGCAaCGAGGCu -3'
miRNA:   3'- cGCGG-CUCGCUgUCGuCGUgGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 31585 0.72 0.180181
Target:  5'- cGCGCCGAagaauccgGUGAUugaGGUaacgAGCGCCGGGGUa -3'
miRNA:   3'- -CGCGGCU--------CGCUG---UCG----UCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 43103 0.72 0.194937
Target:  5'- uCGCCaGGCGACG--GGCACCGGGGa -3'
miRNA:   3'- cGCGGcUCGCUGUcgUCGUGGCUCCg -5'
18743 3' -59.8 NC_004682.1 + 3663 0.72 0.194937
Target:  5'- cCGCCGA-CGA-GGCGGCACCGAcggaGGCc -3'
miRNA:   3'- cGCGGCUcGCUgUCGUCGUGGCU----CCG- -5'
18743 3' -59.8 NC_004682.1 + 17037 0.72 0.200085
Target:  5'- cUGCCGA-CGACgaggcccaGGCGGCucccGCCGAGGCc -3'
miRNA:   3'- cGCGGCUcGCUG--------UCGUCG----UGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 12815 0.71 0.216246
Target:  5'- gGCGCUGAG-GcACcuCGGCACCGAGGa -3'
miRNA:   3'- -CGCGGCUCgC-UGucGUCGUGGCUCCg -5'
18743 3' -59.8 NC_004682.1 + 23397 0.71 0.233512
Target:  5'- aGgGCCGugaaCGACAGCGagaacgccaguGCGCCGAcGGCg -3'
miRNA:   3'- -CgCGGCuc--GCUGUCGU-----------CGUGGCU-CCG- -5'
18743 3' -59.8 NC_004682.1 + 28691 0.71 0.237704
Target:  5'- cGUGCCGAugccgcccacucGCGGCGGCGGCgggacgaagaugacGCCGugcGGGUa -3'
miRNA:   3'- -CGCGGCU------------CGCUGUCGUCG--------------UGGC---UCCG- -5'
18743 3' -59.8 NC_004682.1 + 40147 0.71 0.23952
Target:  5'- -gGCCG-GCGuuGGUGGCcCCGAGGUa -3'
miRNA:   3'- cgCGGCuCGCugUCGUCGuGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 5124 0.7 0.245037
Target:  5'- cGCGCCGAuccuggcGCGuGCuGCgGGCAucuCCGAGGCc -3'
miRNA:   3'- -CGCGGCU-------CGC-UGuCG-UCGU---GGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 29589 0.7 0.245656
Target:  5'- uCGUCGucAGCGACGgucacGCGGUACgCGGGGCu -3'
miRNA:   3'- cGCGGC--UCGCUGU-----CGUCGUG-GCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 3231 0.7 0.245656
Target:  5'- gGCGCggcacaGGGCGACAuCGGCGgCGcAGGCa -3'
miRNA:   3'- -CGCGg-----CUCGCUGUcGUCGUgGC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.