miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18743 3' -59.8 NC_004682.1 + 2669 0.69 0.32194
Target:  5'- cGC-CCGGuGUGGCGGCAGCgACCucugccugGGGGCc -3'
miRNA:   3'- -CGcGGCU-CGCUGUCGUCG-UGG--------CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 2962 0.66 0.471562
Target:  5'- gGCG-CGGGCG---GCGGCGCUG-GGCa -3'
miRNA:   3'- -CGCgGCUCGCuguCGUCGUGGCuCCG- -5'
18743 3' -59.8 NC_004682.1 + 3141 0.69 0.313573
Target:  5'- gGCGCa-GGCGGC-GCAGCAgCCGccaacucGGGCa -3'
miRNA:   3'- -CGCGgcUCGCUGuCGUCGU-GGC-------UCCG- -5'
18743 3' -59.8 NC_004682.1 + 3231 0.7 0.245656
Target:  5'- gGCGCggcacaGGGCGACAuCGGCGgCGcAGGCa -3'
miRNA:   3'- -CGCGg-----CUCGCUGUcGUCGUgGC-UCCG- -5'
18743 3' -59.8 NC_004682.1 + 3663 0.72 0.194937
Target:  5'- cCGCCGA-CGA-GGCGGCACCGAcggaGGCc -3'
miRNA:   3'- cGCGGCUcGCUgUCGUCGUGGCU----CCG- -5'
18743 3' -59.8 NC_004682.1 + 4130 0.67 0.396564
Target:  5'- gGUuUCGAGCGGCAcGCGGUACCcGGuGCu -3'
miRNA:   3'- -CGcGGCUCGCUGU-CGUCGUGGcUC-CG- -5'
18743 3' -59.8 NC_004682.1 + 4661 0.66 0.461786
Target:  5'- uCGCCGAGa---AGCugacguGCAUCGAGGUc -3'
miRNA:   3'- cGCGGCUCgcugUCGu-----CGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 4967 0.69 0.29951
Target:  5'- gGUGCuCGGGCGgucuggaucgccACAGCGGCuuccaGCCGcaGGGCu -3'
miRNA:   3'- -CGCG-GCUCGC------------UGUCGUCG-----UGGC--UCCG- -5'
18743 3' -59.8 NC_004682.1 + 5009 0.67 0.423797
Target:  5'- aCGgCGAGCaauuggccGAC-GCGGuCGCUGAGGCu -3'
miRNA:   3'- cGCgGCUCG--------CUGuCGUC-GUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 5124 0.7 0.245037
Target:  5'- cGCGCCGAuccuggcGCGuGCuGCgGGCAucuCCGAGGCc -3'
miRNA:   3'- -CGCGGCU-------CGC-UGuCG-UCGU---GGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 7299 0.67 0.423797
Target:  5'- cGUGCUGAGgGACAGCgacGGCAacgugaucguCCGGGa- -3'
miRNA:   3'- -CGCGGCUCgCUGUCG---UCGU----------GGCUCcg -5'
18743 3' -59.8 NC_004682.1 + 7571 0.67 0.414595
Target:  5'- -gGCCG-GCG--GGC-GCAUCGAGGCc -3'
miRNA:   3'- cgCGGCuCGCugUCGuCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 7764 0.66 0.432182
Target:  5'- aGCGUCGGcGUGACaAGCAGgaGCUgcguaagGAGGCa -3'
miRNA:   3'- -CGCGGCU-CGCUG-UCGUCg-UGG-------CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 8357 0.67 0.387741
Target:  5'- cGCGCCGAcGUGA-AGgAGU-UCGAGGCg -3'
miRNA:   3'- -CGCGGCU-CGCUgUCgUCGuGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 8516 0.66 0.452118
Target:  5'- aGUGCgGAGCuGGCucuaccGCACCGAGGa -3'
miRNA:   3'- -CGCGgCUCG-CUGucgu--CGUGGCUCCg -5'
18743 3' -59.8 NC_004682.1 + 8855 0.67 0.387741
Target:  5'- -aGuCCGAGCGcCGGCccgaCGCCGuAGGCg -3'
miRNA:   3'- cgC-GGCUCGCuGUCGuc--GUGGC-UCCG- -5'
18743 3' -59.8 NC_004682.1 + 9401 0.66 0.481442
Target:  5'- aGCGCCu-GCGugguCGGCcuGCACCacgucaccgGAGGCu -3'
miRNA:   3'- -CGCGGcuCGCu---GUCGu-CGUGG---------CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 9797 0.67 0.411858
Target:  5'- -gGUCGAGCGGaagaacaagaucuuCGGCGGCGCgUGGGaGCa -3'
miRNA:   3'- cgCGGCUCGCU--------------GUCGUCGUG-GCUC-CG- -5'
18743 3' -59.8 NC_004682.1 + 9896 0.66 0.461786
Target:  5'- aCGUCGAGCGAgccgccaAGCGGUggauuCCguGAGGCg -3'
miRNA:   3'- cGCGGCUCGCUg------UCGUCGu----GG--CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 10129 0.75 0.117147
Target:  5'- -aGCCGAGUGggacgagcACGGCAagcGCGCCGGGGUc -3'
miRNA:   3'- cgCGGCUCGC--------UGUCGU---CGUGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.