miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18743 3' -59.8 NC_004682.1 + 39337 0.68 0.369636
Target:  5'- uUGCCGuuggcgcGGCGGCAGCcguAGCACC--GGCc -3'
miRNA:   3'- cGCGGC-------UCGCUGUCG---UCGUGGcuCCG- -5'
18743 3' -59.8 NC_004682.1 + 15814 0.69 0.28524
Target:  5'- aGCGC--GGCGGCaAGCAGUuCCGGGGa -3'
miRNA:   3'- -CGCGgcUCGCUG-UCGUCGuGGCUCCg -5'
18743 3' -59.8 NC_004682.1 + 4967 0.69 0.29951
Target:  5'- gGUGCuCGGGCGgucuggaucgccACAGCGGCuuccaGCCGcaGGGCu -3'
miRNA:   3'- -CGCG-GCUCGC------------UGUCGUCG-----UGGC--UCCG- -5'
18743 3' -59.8 NC_004682.1 + 13819 0.69 0.29951
Target:  5'- aUGCCGAgGCGAaggAGCgaGGCcggaagGCCGAGGCc -3'
miRNA:   3'- cGCGGCU-CGCUg--UCG--UCG------UGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 3141 0.69 0.313573
Target:  5'- gGCGCa-GGCGGC-GCAGCAgCCGccaacucGGGCa -3'
miRNA:   3'- -CGCGgcUCGCUGuCGUCGU-GGC-------UCCG- -5'
18743 3' -59.8 NC_004682.1 + 28093 0.69 0.32194
Target:  5'- aCGCuCGGGCGugGcugcucGCGGCGgCGAGcGCg -3'
miRNA:   3'- cGCG-GCUCGCugU------CGUCGUgGCUC-CG- -5'
18743 3' -59.8 NC_004682.1 + 46690 0.68 0.329691
Target:  5'- aCGCCGAa-GAUGuGCAGCACCG-GGUa -3'
miRNA:   3'- cGCGGCUcgCUGU-CGUCGUGGCuCCG- -5'
18743 3' -59.8 NC_004682.1 + 14725 0.68 0.353761
Target:  5'- uGC-CCGAGUucggcuucGACGGUGGUgacACCGAGGUc -3'
miRNA:   3'- -CGcGGCUCG--------CUGUCGUCG---UGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 41807 0.68 0.362056
Target:  5'- aGCGUCGGgacucGCGcCAGCAGCGCguaggucaggaCGaAGGCu -3'
miRNA:   3'- -CGCGGCU-----CGCuGUCGUCGUG-----------GC-UCCG- -5'
18743 3' -59.8 NC_004682.1 + 33389 0.7 0.271512
Target:  5'- uCGCCGugGGCG-CAGUAGCGCUucuccccguugGGGGCc -3'
miRNA:   3'- cGCGGC--UCGCuGUCGUCGUGG-----------CUCCG- -5'
18743 3' -59.8 NC_004682.1 + 16976 0.7 0.26419
Target:  5'- aGCGuUCGAGCagaugaaGACGGCGGUcuCCGGGGUc -3'
miRNA:   3'- -CGC-GGCUCG-------CUGUCGUCGu-GGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 46566 0.7 0.25832
Target:  5'- cGUGCgGuAGuCG-UAGguGUACCGAGGCg -3'
miRNA:   3'- -CGCGgC-UC-GCuGUCguCGUGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 16673 0.77 0.081749
Target:  5'- uGCGCuCGGGCGGCAGCGGUgauggGCCuggaGGGCu -3'
miRNA:   3'- -CGCG-GCUCGCUGUCGUCG-----UGGc---UCCG- -5'
18743 3' -59.8 NC_004682.1 + 35237 0.77 0.08644
Target:  5'- --uCCGAGCcaacGGCAGCGGCcCCGAGGCc -3'
miRNA:   3'- cgcGGCUCG----CUGUCGUCGuGGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 46273 0.73 0.166423
Target:  5'- aGCGcCCGAGCGAacGCGGCGuuGcGGCc -3'
miRNA:   3'- -CGC-GGCUCGCUguCGUCGUggCuCCG- -5'
18743 3' -59.8 NC_004682.1 + 45554 0.73 0.175486
Target:  5'- uGCGCCGgggccGGCGugAGCAGCAgCCccagcgcGGCg -3'
miRNA:   3'- -CGCGGC-----UCGCugUCGUCGU-GGcu-----CCG- -5'
18743 3' -59.8 NC_004682.1 + 28691 0.71 0.237704
Target:  5'- cGUGCCGAugccgcccacucGCGGCGGCGGCgggacgaagaugacGCCGugcGGGUa -3'
miRNA:   3'- -CGCGGCU------------CGCUGUCGUCG--------------UGGC---UCCG- -5'
18743 3' -59.8 NC_004682.1 + 5124 0.7 0.245037
Target:  5'- cGCGCCGAuccuggcGCGuGCuGCgGGCAucuCCGAGGCc -3'
miRNA:   3'- -CGCGGCU-------CGC-UGuCG-UCGU---GGCUCCG- -5'
18743 3' -59.8 NC_004682.1 + 3231 0.7 0.245656
Target:  5'- gGCGCggcacaGGGCGACAuCGGCGgCGcAGGCa -3'
miRNA:   3'- -CGCGg-----CUCGCUGUcGUCGUgGC-UCCG- -5'
18743 3' -59.8 NC_004682.1 + 29589 0.7 0.245656
Target:  5'- uCGUCGucAGCGACGgucacGCGGUACgCGGGGCu -3'
miRNA:   3'- cGCGGC--UCGCUGU-----CGUCGUG-GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.