miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18750 5' -60.3 NC_004683.1 + 18082 0.66 0.494312
Target:  5'- cCGGCGGGcACCaCgGCCAccuaucAGaUCgGCACGa -3'
miRNA:   3'- -GCCGCCCuUGG-GgCGGU------UC-AG-CGUGU- -5'
18750 5' -60.3 NC_004683.1 + 48228 0.66 0.493319
Target:  5'- gCGGCGGGAacaaaucgcGCCgaaaugagcgacgCCGCCGgcgAGUggcUGCGCAg -3'
miRNA:   3'- -GCCGCCCU---------UGG-------------GGCGGU---UCA---GCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 14564 0.66 0.484426
Target:  5'- gCGGUGGGuucaucuACgCCGaCGGGUCGCAg- -3'
miRNA:   3'- -GCCGCCCu------UGgGGCgGUUCAGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 35791 0.66 0.481478
Target:  5'- aGGUGGucaaaccguuaucgGggUCCCGCCAGGcUCagGCGCGu -3'
miRNA:   3'- gCCGCC--------------CuuGGGGCGGUUC-AG--CGUGU- -5'
18750 5' -60.3 NC_004683.1 + 32457 0.66 0.474635
Target:  5'- -uGUGGGcACCCCGCgGAGaUGCAUc -3'
miRNA:   3'- gcCGCCCuUGGGGCGgUUCaGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 56711 0.66 0.474635
Target:  5'- aCGGacuGAGCCCCGaCGAGgCGCGCAu -3'
miRNA:   3'- -GCCgccCUUGGGGCgGUUCaGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 55222 0.66 0.455357
Target:  5'- cCGaGCGGGuGACCUCGCCAuGcUCGUcCAu -3'
miRNA:   3'- -GC-CGCCC-UUGGGGCGGUuC-AGCGuGU- -5'
18750 5' -60.3 NC_004683.1 + 5829 0.66 0.455357
Target:  5'- uCGGCGGcGGugCCCGC-GAG-CGCGg- -3'
miRNA:   3'- -GCCGCC-CUugGGGCGgUUCaGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 585 0.66 0.455357
Target:  5'- uGGCGGGGuUCCCGCCGGaUCccgaGCAg -3'
miRNA:   3'- gCCGCCCUuGGGGCGGUUcAGcg--UGU- -5'
18750 5' -60.3 NC_004683.1 + 24251 0.67 0.41812
Target:  5'- gCGGUGGGcccgcGCCUaCGCCGAGUCcUACGc -3'
miRNA:   3'- -GCCGCCCu----UGGG-GCGGUUCAGcGUGU- -5'
18750 5' -60.3 NC_004683.1 + 9838 0.67 0.41812
Target:  5'- cCGGgGGcGAAUCCCGCUuuGAGgaacuuggCGUACAc -3'
miRNA:   3'- -GCCgCC-CUUGGGGCGG--UUCa-------GCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 7844 0.67 0.415402
Target:  5'- aCGGCGaguuccgccgugucGGAcccgacACCCCGaCCAAGgcgcagggcaUCGCGCAg -3'
miRNA:   3'- -GCCGC--------------CCU------UGGGGC-GGUUC----------AGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 44861 0.67 0.409103
Target:  5'- -cGCGGGcacgcggcccGCCgCCGCCGGGUCGUAg- -3'
miRNA:   3'- gcCGCCCu---------UGG-GGCGGUUCAGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 51547 0.67 0.409103
Target:  5'- aCGGCaGGcGCgCCGCCAg--CGCACGc -3'
miRNA:   3'- -GCCGcCCuUGgGGCGGUucaGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 50932 0.67 0.405531
Target:  5'- uGGgGGGAGaCCCGCaaaaccuucccGUCGCGCAc -3'
miRNA:   3'- gCCgCCCUUgGGGCGguu--------CAGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 1423 0.67 0.400209
Target:  5'- uCGGCGGGA---UCGagCGAGUCGCGCu -3'
miRNA:   3'- -GCCGCCCUuggGGCg-GUUCAGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 44358 0.67 0.400209
Target:  5'- uCGGCGcGGAucGCCgCGUCGAGcCGCGu- -3'
miRNA:   3'- -GCCGC-CCU--UGGgGCGGUUCaGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 9725 0.67 0.400209
Target:  5'- aGGauGGGACCCUGCCcGAGgUGUACGc -3'
miRNA:   3'- gCCgcCCUUGGGGCGG-UUCaGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 12236 0.67 0.400209
Target:  5'- gGGCGGGAGCgCCCggcgugccgauGCCcGG-CGCugGu -3'
miRNA:   3'- gCCGCCCUUG-GGG-----------CGGuUCaGCGugU- -5'
18750 5' -60.3 NC_004683.1 + 46057 0.67 0.391439
Target:  5'- -uGUGGGAcguGCCCCgguucGCCGAGgCGCACc -3'
miRNA:   3'- gcCGCCCU---UGGGG-----CGGUUCaGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.