Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 1030 | 1.13 | 0.00107 |
Target: 5'- uGUUGGUGCGCGCCUUGAAGAUCACGCg -3' miRNA: 3'- -CAACCACGCGCGGAACUUCUAGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 5257 | 0.74 | 0.414528 |
Target: 5'- --cGGcguaccUGCGCGCCUggucGAAGAUggCACGCa -3' miRNA: 3'- caaCC------ACGCGCGGAa---CUUCUA--GUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 7277 | 0.73 | 0.443915 |
Target: 5'- -gUGGUGCGUGCCUUGGccuuaAG-UC-CGCc -3' miRNA: 3'- caACCACGCGCGGAACU-----UCuAGuGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 5396 | 0.72 | 0.505976 |
Target: 5'- cGUUGaugGCGCGCUUcuccucuucggUGAGGAUCGCGg -3' miRNA: 3'- -CAACca-CGCGCGGA-----------ACUUCUAGUGCg -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 26259 | 0.71 | 0.549339 |
Target: 5'- cGUUGGUGUgGCGCCgguucauGAUCGCGa -3' miRNA: 3'- -CAACCACG-CGCGGaacuu--CUAGUGCg -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 41518 | 0.71 | 0.582602 |
Target: 5'- --cGGUGCGCguauaGCCUUcGucGAUCAgCGCa -3' miRNA: 3'- caaCCACGCG-----CGGAA-CuuCUAGU-GCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 24059 | 0.69 | 0.672478 |
Target: 5'- -gUGGUGauCGCGCC--GAGGggCACGUa -3' miRNA: 3'- caACCAC--GCGCGGaaCUUCuaGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 41816 | 0.69 | 0.694768 |
Target: 5'- uGUUGGUGCGUGCCcaGcAGGUUgAgGCg -3' miRNA: 3'- -CAACCACGCGCGGaaCuUCUAG-UgCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 51621 | 0.69 | 0.694768 |
Target: 5'- -cUGGcgGCGCGCCUgccgugcgUGAuGGAUCAgGUc -3' miRNA: 3'- caACCa-CGCGCGGA--------ACU-UCUAGUgCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 52323 | 0.69 | 0.716805 |
Target: 5'- cUUGGUGcCGCGCCggcccGGGUCGCcgagGCg -3' miRNA: 3'- cAACCAC-GCGCGGaacu-UCUAGUG----CG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 54330 | 0.68 | 0.727697 |
Target: 5'- --cGGUGgGCauguuaggugGCa-UGggGAUCACGCg -3' miRNA: 3'- caaCCACgCG----------CGgaACuuCUAGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 51173 | 0.68 | 0.727697 |
Target: 5'- -cUGGauccgGCGCGCCgccGAGAaCGCGCc -3' miRNA: 3'- caACCa----CGCGCGGaacUUCUaGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 16402 | 0.68 | 0.73849 |
Target: 5'- -cUGGauacgcaGCGCGCaCUcGGAGAUCAUGUu -3' miRNA: 3'- caACCa------CGCGCG-GAaCUUCUAGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 51548 | 0.68 | 0.759727 |
Target: 5'- --cGGcagGCGCGCCgcc-AGcgCACGCa -3' miRNA: 3'- caaCCa--CGCGCGGaacuUCuaGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 55044 | 0.68 | 0.759727 |
Target: 5'- --cGGUGUGCGU-----AGAUCAUGCa -3' miRNA: 3'- caaCCACGCGCGgaacuUCUAGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 47615 | 0.68 | 0.770147 |
Target: 5'- --cGGUcGUGCaGCCa--GGGAUCACGCa -3' miRNA: 3'- caaCCA-CGCG-CGGaacUUCUAGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 46809 | 0.68 | 0.770147 |
Target: 5'- -gUGGUGCGCGUCg-GAaucGGAUCGucagugcucguCGCg -3' miRNA: 3'- caACCACGCGCGGaaCU---UCUAGU-----------GCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 6492 | 0.67 | 0.780417 |
Target: 5'- --aGGUGCGCGCgaccCUUGAccgcGGUguCGCu -3' miRNA: 3'- caaCCACGCGCG----GAACUu---CUAguGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 6841 | 0.67 | 0.819772 |
Target: 5'- --cGGU-CGCGCCgc-AAGggCACGCu -3' miRNA: 3'- caaCCAcGCGCGGaacUUCuaGUGCG- -5' |
|||||||
18751 | 3' | -52.4 | NC_004683.1 | + | 37293 | 0.67 | 0.819772 |
Target: 5'- cUUGGUGgGUGCg--GAGcGAUUGCGCg -3' miRNA: 3'- cAACCACgCGCGgaaCUU-CUAGUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home