miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 3' -52.4 NC_004683.1 + 1030 1.13 0.00107
Target:  5'- uGUUGGUGCGCGCCUUGAAGAUCACGCg -3'
miRNA:   3'- -CAACCACGCGCGGAACUUCUAGUGCG- -5'
18751 3' -52.4 NC_004683.1 + 3456 0.66 0.872428
Target:  5'- --aGGUcCGCGCCgaGAcGAUCaacACGCu -3'
miRNA:   3'- caaCCAcGCGCGGaaCUuCUAG---UGCG- -5'
18751 3' -52.4 NC_004683.1 + 5257 0.74 0.414528
Target:  5'- --cGGcguaccUGCGCGCCUggucGAAGAUggCACGCa -3'
miRNA:   3'- caaCC------ACGCGCGGAa---CUUCUA--GUGCG- -5'
18751 3' -52.4 NC_004683.1 + 5396 0.72 0.505976
Target:  5'- cGUUGaugGCGCGCUUcuccucuucggUGAGGAUCGCGg -3'
miRNA:   3'- -CAACca-CGCGCGGA-----------ACUUCUAGUGCg -5'
18751 3' -52.4 NC_004683.1 + 5788 0.66 0.829122
Target:  5'- -cUGGuUGCccuggccgGUGCCggucgUGAGGGUCACGg -3'
miRNA:   3'- caACC-ACG--------CGCGGa----ACUUCUAGUGCg -5'
18751 3' -52.4 NC_004683.1 + 6492 0.67 0.780417
Target:  5'- --aGGUGCGCGCgaccCUUGAccgcGGUguCGCu -3'
miRNA:   3'- caaCCACGCGCG----GAACUu---CUAguGCG- -5'
18751 3' -52.4 NC_004683.1 + 6841 0.67 0.819772
Target:  5'- --cGGU-CGCGCCgc-AAGggCACGCu -3'
miRNA:   3'- caaCCAcGCGCGGaacUUCuaGUGCG- -5'
18751 3' -52.4 NC_004683.1 + 7155 0.67 0.819772
Target:  5'- cGUUGGUGgGCGUCgcUGAgacGGGU-GCGCc -3'
miRNA:   3'- -CAACCACgCGCGGa-ACU---UCUAgUGCG- -5'
18751 3' -52.4 NC_004683.1 + 7277 0.73 0.443915
Target:  5'- -gUGGUGCGUGCCUUGGccuuaAG-UC-CGCc -3'
miRNA:   3'- caACCACGCGCGGAACU-----UCuAGuGCG- -5'
18751 3' -52.4 NC_004683.1 + 14409 0.66 0.864256
Target:  5'- cUUGGUccuGCGCGCCgacaacGGGuUCugGCg -3'
miRNA:   3'- cAACCA---CGCGCGGaac---UUCuAGugCG- -5'
18751 3' -52.4 NC_004683.1 + 16402 0.68 0.73849
Target:  5'- -cUGGauacgcaGCGCGCaCUcGGAGAUCAUGUu -3'
miRNA:   3'- caACCa------CGCGCG-GAaCUUCUAGUGCG- -5'
18751 3' -52.4 NC_004683.1 + 16559 0.66 0.831885
Target:  5'- gGUUGGUGCgcaccacguacauggGCGUCUUGAGcAUCuccagcaGCGCc -3'
miRNA:   3'- -CAACCACG---------------CGCGGAACUUcUAG-------UGCG- -5'
18751 3' -52.4 NC_004683.1 + 24059 0.69 0.672478
Target:  5'- -gUGGUGauCGCGCC--GAGGggCACGUa -3'
miRNA:   3'- caACCAC--GCGCGGaaCUUCuaGUGCG- -5'
18751 3' -52.4 NC_004683.1 + 26259 0.71 0.549339
Target:  5'- cGUUGGUGUgGCGCCgguucauGAUCGCGa -3'
miRNA:   3'- -CAACCACG-CGCGGaacuu--CUAGUGCg -5'
18751 3' -52.4 NC_004683.1 + 30463 0.66 0.838255
Target:  5'- --cGGUuacUGCGCCUaGAuGAUCugGCu -3'
miRNA:   3'- caaCCAc--GCGCGGAaCUuCUAGugCG- -5'
18751 3' -52.4 NC_004683.1 + 37293 0.67 0.819772
Target:  5'- cUUGGUGgGUGCg--GAGcGAUUGCGCg -3'
miRNA:   3'- cAACCACgCGCGgaaCUU-CUAGUGCG- -5'
18751 3' -52.4 NC_004683.1 + 40092 0.66 0.855831
Target:  5'- --cGGgcccaGCGCGCCUUGAcAGAccagCcggACGCg -3'
miRNA:   3'- caaCCa----CGCGCGGAACU-UCUa---G---UGCG- -5'
18751 3' -52.4 NC_004683.1 + 41518 0.71 0.582602
Target:  5'- --cGGUGCGCguauaGCCUUcGucGAUCAgCGCa -3'
miRNA:   3'- caaCCACGCG-----CGGAA-CuuCUAGU-GCG- -5'
18751 3' -52.4 NC_004683.1 + 41816 0.69 0.694768
Target:  5'- uGUUGGUGCGUGCCcaGcAGGUUgAgGCg -3'
miRNA:   3'- -CAACCACGCGCGGaaCuUCUAG-UgCG- -5'
18751 3' -52.4 NC_004683.1 + 43975 0.66 0.838255
Target:  5'- -----cGCGCGCCUcccGGAUCgACGCg -3'
miRNA:   3'- caaccaCGCGCGGAacuUCUAG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.