Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 41816 | 0.69 | 0.694768 |
|
Target: 5'- uGUUGGUGCGUGCCcaGcAGGUUgAgGCg -3' miRNA: 3'- -CAACCACGCGCGGaaCuUCUAG-UgCG- -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 24059 | 0.69 | 0.672478 |
|
Target: 5'- -gUGGUGauCGCGCC--GAGGggCACGUa -3' miRNA: 3'- caACCAC--GCGCGGaaCUUCuaGUGCG- -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 41518 | 0.71 | 0.582602 |
|
Target: 5'- --cGGUGCGCguauaGCCUUcGucGAUCAgCGCa -3' miRNA: 3'- caaCCACGCG-----CGGAA-CuuCUAGU-GCG- -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 26259 | 0.71 | 0.549339 |
|
Target: 5'- cGUUGGUGUgGCGCCgguucauGAUCGCGa -3' miRNA: 3'- -CAACCACG-CGCGGaacuu--CUAGUGCg -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 5396 | 0.72 | 0.505976 |
|
Target: 5'- cGUUGaugGCGCGCUUcuccucuucggUGAGGAUCGCGg -3' miRNA: 3'- -CAACca-CGCGCGGA-----------ACUUCUAGUGCg -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 7277 | 0.73 | 0.443915 |
|
Target: 5'- -gUGGUGCGUGCCUUGGccuuaAG-UC-CGCc -3' miRNA: 3'- caACCACGCGCGGAACU-----UCuAGuGCG- -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 5257 | 0.74 | 0.414528 |
|
Target: 5'- --cGGcguaccUGCGCGCCUggucGAAGAUggCACGCa -3' miRNA: 3'- caaCC------ACGCGCGGAa---CUUCUA--GUGCG- -5' |
|||||||
| 18751 | 3' | -52.4 | NC_004683.1 | + | 1030 | 1.13 | 0.00107 |
|
Target: 5'- uGUUGGUGCGCGCCUUGAAGAUCACGCg -3' miRNA: 3'- -CAACCACGCGCGGAACUUCUAGUGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home