miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 5' -53.4 NC_004683.1 + 4929 0.66 0.835706
Target:  5'- cGGCAaGCCUcagagCGGCGGCcagCGgcgcAUGCg -3'
miRNA:   3'- cCCGUgCGGAa----GCUGCCGaa-GU----UACG- -5'
18751 5' -53.4 NC_004683.1 + 31985 0.68 0.726612
Target:  5'- gGGGUACcaacCCgcgGGCGGCUgaggCGGUGCg -3'
miRNA:   3'- -CCCGUGc---GGaagCUGCCGAa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 22700 0.68 0.737238
Target:  5'- cGGGCucuACGCCgguUCGACGcGCgUCg--GCa -3'
miRNA:   3'- -CCCG---UGCGGa--AGCUGC-CGaAGuuaCG- -5'
18751 5' -53.4 NC_004683.1 + 9245 0.67 0.747757
Target:  5'- -cGCugGCCggCGACGGCUcguaagacccUCGcgggGCg -3'
miRNA:   3'- ccCGugCGGaaGCUGCCGA----------AGUua--CG- -5'
18751 5' -53.4 NC_004683.1 + 47572 0.67 0.747757
Target:  5'- gGGGCGuCcCCUgCGACGGCUgcgugGCg -3'
miRNA:   3'- -CCCGU-GcGGAaGCUGCCGAaguuaCG- -5'
18751 5' -53.4 NC_004683.1 + 26141 0.67 0.788527
Target:  5'- cGGGUAuCGCCggcgCGGCGGUcUCGcUGa -3'
miRNA:   3'- -CCCGU-GCGGaa--GCUGCCGaAGUuACg -5'
18751 5' -53.4 NC_004683.1 + 7414 0.66 0.804138
Target:  5'- cGGGCGCGCUgccacauuccacaUCGACgGGCcgaUCA-UGCc -3'
miRNA:   3'- -CCCGUGCGGa------------AGCUG-CCGa--AGUuACG- -5'
18751 5' -53.4 NC_004683.1 + 637 0.66 0.807969
Target:  5'- cGGCAUcgacucgaaugGCCggUCGACGGCgUUCGAg-- -3'
miRNA:   3'- cCCGUG-----------CGGa-AGCUGCCG-AAGUUacg -5'
18751 5' -53.4 NC_004683.1 + 4036 0.66 0.821139
Target:  5'- cGGUAagGCCaUCGACGGCaugUCGuuccgguucucggugGUGCg -3'
miRNA:   3'- cCCGUg-CGGaAGCUGCCGa--AGU---------------UACG- -5'
18751 5' -53.4 NC_004683.1 + 17999 0.68 0.715891
Target:  5'- cGGUgaACGCCgacggCGACGGgUUCGaccugGUGCc -3'
miRNA:   3'- cCCG--UGCGGaa---GCUGCCgAAGU-----UACG- -5'
18751 5' -53.4 NC_004683.1 + 10600 0.68 0.713736
Target:  5'- aGGCGCGCCgcgcugaggugCgGGCGGUccgCGAUGCc -3'
miRNA:   3'- cCCGUGCGGaa---------G-CUGCCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 12794 0.68 0.705085
Target:  5'- cGGGaUACGCCgcUGGCGGauacccgggCGAUGCg -3'
miRNA:   3'- -CCC-GUGCGGaaGCUGCCgaa------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 10467 0.75 0.355098
Target:  5'- cGGGCgucggACGCCUaCGACaaGGCgcgCGAUGCu -3'
miRNA:   3'- -CCCG-----UGCGGAaGCUG--CCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 23088 0.74 0.399462
Target:  5'- cGGCGCGCUcUCGugGGCgUUCGccaGCg -3'
miRNA:   3'- cCCGUGCGGaAGCugCCG-AAGUua-CG- -5'
18751 5' -53.4 NC_004683.1 + 20416 0.73 0.447212
Target:  5'- gGGGCG-GCCaaCGGCGGCaccggCGGUGCa -3'
miRNA:   3'- -CCCGUgCGGaaGCUGCCGaa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 267 0.71 0.551146
Target:  5'- gGGGCugGUCg-CGACGGUggUCAAggaGCu -3'
miRNA:   3'- -CCCGugCGGaaGCUGCCGa-AGUUa--CG- -5'
18751 5' -53.4 NC_004683.1 + 39897 0.71 0.562004
Target:  5'- cGGGUugGCCggaCGACGGUcuacagcugUUCAAacgggGCg -3'
miRNA:   3'- -CCCGugCGGaa-GCUGCCG---------AAGUUa----CG- -5'
18751 5' -53.4 NC_004683.1 + 40312 0.7 0.594887
Target:  5'- aGGGCAuCGCCg-CGGCGGUgaccCGAUGa -3'
miRNA:   3'- -CCCGU-GCGGaaGCUGCCGaa--GUUACg -5'
18751 5' -53.4 NC_004683.1 + 7670 0.69 0.68327
Target:  5'- -aGUACGCCgcgUCGugGGCggUGAUGa -3'
miRNA:   3'- ccCGUGCGGa--AGCugCCGaaGUUACg -5'
18751 5' -53.4 NC_004683.1 + 5484 0.68 0.705085
Target:  5'- uGGCACGgCguguccUCGGCGGCcgugCAGUGg -3'
miRNA:   3'- cCCGUGCgGa-----AGCUGCCGaa--GUUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.