Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18751 | 5' | -53.4 | NC_004683.1 | + | 267 | 0.71 | 0.551146 |
Target: 5'- gGGGCugGUCg-CGACGGUggUCAAggaGCu -3' miRNA: 3'- -CCCGugCGGaaGCUGCCGa-AGUUa--CG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 318 | 0.72 | 0.477338 |
Target: 5'- cGGGCA-GCag-CGGCGGCaUCGcgGCg -3' miRNA: 3'- -CCCGUgCGgaaGCUGCCGaAGUuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 637 | 0.66 | 0.807969 |
Target: 5'- cGGCAUcgacucgaaugGCCggUCGACGGCgUUCGAg-- -3' miRNA: 3'- cCCGUG-----------CGGa-AGCUGCCG-AAGUUacg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 993 | 1.15 | 0.000618 |
Target: 5'- cGGGCACGCCUUCGACGGCUUCAAUGCg -3' miRNA: 3'- -CCCGUGCGGAAGCUGCCGAAGUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 1441 | 0.67 | 0.788527 |
Target: 5'- aGGCGCucgcgGCCgaacUCGGCGGgaUCGA-GCg -3' miRNA: 3'- cCCGUG-----CGGa---AGCUGCCgaAGUUaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 4036 | 0.66 | 0.821139 |
Target: 5'- cGGUAagGCCaUCGACGGCaugUCGuuccgguucucggugGUGCg -3' miRNA: 3'- cCCGUg-CGGaAGCUGCCGa--AGU---------------UACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 4733 | 0.66 | 0.807968 |
Target: 5'- cGGGcCACGCUUgcccaugcCGAUGGCacgcaggcCGGUGCg -3' miRNA: 3'- -CCC-GUGCGGAa-------GCUGCCGaa------GUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 4929 | 0.66 | 0.835706 |
Target: 5'- cGGCAaGCCUcagagCGGCGGCcagCGgcgcAUGCg -3' miRNA: 3'- cCCGUgCGGAa----GCUGCCGaa-GU----UACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 4947 | 0.68 | 0.726612 |
Target: 5'- cGGCGCGCUccaGGCGGCU-CA-UGUg -3' miRNA: 3'- cCCGUGCGGaagCUGCCGAaGUuACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 5484 | 0.68 | 0.705085 |
Target: 5'- uGGCACGgCguguccUCGGCGGCcgugCAGUGg -3' miRNA: 3'- cCCGUGCgGa-----AGCUGCCGaa--GUUACg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 6742 | 0.7 | 0.572918 |
Target: 5'- cGGCGCGCCgcggccaGcACGGCgUCGAUGg -3' miRNA: 3'- cCCGUGCGGaag----C-UGCCGaAGUUACg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 7048 | 0.74 | 0.381295 |
Target: 5'- uGGGCGCGCCggcCGACGaGCUgcacCAccGCc -3' miRNA: 3'- -CCCGUGCGGaa-GCUGC-CGAa---GUuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 7414 | 0.66 | 0.804138 |
Target: 5'- cGGGCGCGCUgccacauuccacaUCGACgGGCcgaUCA-UGCc -3' miRNA: 3'- -CCCGUGCGGa------------AGCUG-CCGa--AGUuACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 7670 | 0.69 | 0.68327 |
Target: 5'- -aGUACGCCgcgUCGugGGCggUGAUGa -3' miRNA: 3'- ccCGUGCGGa--AGCugCCGaaGUUACg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 8244 | 0.66 | 0.807968 |
Target: 5'- uGGcCGCgGCCUUCG-CGGCcUCGGcGCc -3' miRNA: 3'- cCC-GUG-CGGAAGCuGCCGaAGUUaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 9245 | 0.67 | 0.747757 |
Target: 5'- -cGCugGCCggCGACGGCUcguaagacccUCGcgggGCg -3' miRNA: 3'- ccCGugCGGaaGCUGCCGA----------AGUua--CG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 9420 | 0.67 | 0.798336 |
Target: 5'- uGGGCugGauucCUUUCGugGGCUg----GCu -3' miRNA: 3'- -CCCGugC----GGAAGCugCCGAaguuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 9778 | 0.66 | 0.835705 |
Target: 5'- aGGUACGCCUcaCGGuCGGCcaccgcgUUGGUGCc -3' miRNA: 3'- cCCGUGCGGAa-GCU-GCCGa------AGUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 10433 | 0.68 | 0.705085 |
Target: 5'- cGGCgaACGCCUucUCGGCGcGCUU---UGCg -3' miRNA: 3'- cCCG--UGCGGA--AGCUGC-CGAAguuACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 10467 | 0.75 | 0.355098 |
Target: 5'- cGGGCgucggACGCCUaCGACaaGGCgcgCGAUGCu -3' miRNA: 3'- -CCCG-----UGCGGAaGCUG--CCGaa-GUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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