miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 5' -53.4 NC_004683.1 + 10600 0.68 0.713736
Target:  5'- aGGCGCGCCgcgcugaggugCgGGCGGUccgCGAUGCc -3'
miRNA:   3'- cCCGUGCGGaa---------G-CUGCCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 10665 0.71 0.551146
Target:  5'- cGGCGCGCCUucUCGACccgcucagccuGaGCgaCGAUGCg -3'
miRNA:   3'- cCCGUGCGGA--AGCUG-----------C-CGaaGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 12095 0.69 0.68327
Target:  5'- cGGGCGCGCUggcccgcgUCGAuacCGGCUagcugaUCGG-GCg -3'
miRNA:   3'- -CCCGUGCGGa-------AGCU---GCCGA------AGUUaCG- -5'
18751 5' -53.4 NC_004683.1 + 12794 0.68 0.705085
Target:  5'- cGGGaUACGCCgcUGGCGGauacccgggCGAUGCg -3'
miRNA:   3'- -CCC-GUGCGGaaGCUGCCgaa------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 13354 0.73 0.437407
Target:  5'- cGGGCuguagauaucCGCUgcggUCGACGGCgacgcCGAUGCg -3'
miRNA:   3'- -CCCGu---------GCGGa---AGCUGCCGaa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 13444 0.66 0.839262
Target:  5'- uGGGUggcagcgcguuccccGCGCaggguggCGGCGGCUUcCAggGCg -3'
miRNA:   3'- -CCCG---------------UGCGgaa----GCUGCCGAA-GUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 16220 0.73 0.427726
Target:  5'- -cGUACGCCcagUCGugGGUgUCGAUGUa -3'
miRNA:   3'- ccCGUGCGGa--AGCugCCGaAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 17345 0.66 0.835706
Target:  5'- gGGGCGCGacauCUuccgCGGCGGCcUCA-UGUc -3'
miRNA:   3'- -CCCGUGCg---GAa---GCUGCCGaAGUuACG- -5'
18751 5' -53.4 NC_004683.1 + 17835 0.66 0.817415
Target:  5'- cGGGCccggguCGCCcUUGACcaGGCcggCGAUGCc -3'
miRNA:   3'- -CCCGu-----GCGGaAGCUG--CCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 17999 0.68 0.715891
Target:  5'- cGGUgaACGCCgacggCGACGGgUUCGaccugGUGCc -3'
miRNA:   3'- cCCG--UGCGGaa---GCUGCCgAAGU-----UACG- -5'
18751 5' -53.4 NC_004683.1 + 18254 0.66 0.806057
Target:  5'- cGGCGacgaGCCggugaccgugaCGGCGGCUUCGggGUc -3'
miRNA:   3'- cCCGUg---CGGaa---------GCUGCCGAAGUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 18963 0.69 0.68327
Target:  5'- cGGGC-CGCCUccugcggaUCGAagucgGGCgccgugaagUCGAUGCu -3'
miRNA:   3'- -CCCGuGCGGA--------AGCUg----CCGa--------AGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 19155 0.7 0.605924
Target:  5'- aGGCGCGCCgUCGGUGGCgUCGuggGUg -3'
miRNA:   3'- cCCGUGCGGaAGCUGCCGaAGUua-CG- -5'
18751 5' -53.4 NC_004683.1 + 19747 0.67 0.778553
Target:  5'- uGGCGaGCgCUUCGGCGGCgUCGuUGa -3'
miRNA:   3'- cCCGUgCG-GAAGCUGCCGaAGUuACg -5'
18751 5' -53.4 NC_004683.1 + 20416 0.73 0.447212
Target:  5'- gGGGCG-GCCaaCGGCGGCaccggCGGUGCa -3'
miRNA:   3'- -CCCGUgCGGaaGCUGCCGaa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 20574 0.66 0.84453
Target:  5'- cGGgGCGUCUggUGGCGGCg---GUGCg -3'
miRNA:   3'- cCCgUGCGGAa-GCUGCCGaaguUACG- -5'
18751 5' -53.4 NC_004683.1 + 22340 0.67 0.747757
Target:  5'- -cGCACGCUcUCGGgaucgGGgUUCAAUGCg -3'
miRNA:   3'- ccCGUGCGGaAGCUg----CCgAAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 22700 0.68 0.737238
Target:  5'- cGGGCucuACGCCgguUCGACGcGCgUCg--GCa -3'
miRNA:   3'- -CCCG---UGCGGa--AGCUGC-CGaAGuuaCG- -5'
18751 5' -53.4 NC_004683.1 + 23088 0.74 0.399462
Target:  5'- cGGCGCGCUcUCGugGGCgUUCGccaGCg -3'
miRNA:   3'- cCCGUGCGGaAGCugCCG-AAGUua-CG- -5'
18751 5' -53.4 NC_004683.1 + 23419 0.66 0.826664
Target:  5'- cGGCcgcgaACGCCUUCaugauGCGGCUcggGAUGCc -3'
miRNA:   3'- cCCG-----UGCGGAAGc----UGCCGAag-UUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.