miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 5' -53.4 NC_004683.1 + 51260 0.7 0.628056
Target:  5'- gGGGCGCGUUcUCGGCGGCg------- -3'
miRNA:   3'- -CCCGUGCGGaAGCUGCCGaaguuacg -5'
18751 5' -53.4 NC_004683.1 + 30860 0.69 0.650203
Target:  5'- cGGGCggcguGCGCagcCGACGGUgcgcCGGUGCg -3'
miRNA:   3'- -CCCG-----UGCGgaaGCUGCCGaa--GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 12095 0.69 0.68327
Target:  5'- cGGGCGCGCUggcccgcgUCGAuacCGGCUagcugaUCGG-GCg -3'
miRNA:   3'- -CCCGUGCGGa-------AGCU---GCCGA------AGUUaCG- -5'
18751 5' -53.4 NC_004683.1 + 18963 0.69 0.68327
Target:  5'- cGGGC-CGCCUccugcggaUCGAagucgGGCgccgugaagUCGAUGCu -3'
miRNA:   3'- -CCCGuGCGGA--------AGCUg----CCGa--------AGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 7670 0.69 0.68327
Target:  5'- -aGUACGCCgcgUCGugGGCggUGAUGa -3'
miRNA:   3'- ccCGUGCGGa--AGCugCCGaaGUUACg -5'
18751 5' -53.4 NC_004683.1 + 12794 0.68 0.705085
Target:  5'- cGGGaUACGCCgcUGGCGGauacccgggCGAUGCg -3'
miRNA:   3'- -CCC-GUGCGGaaGCUGCCgaa------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 10433 0.68 0.705085
Target:  5'- cGGCgaACGCCUucUCGGCGcGCUU---UGCg -3'
miRNA:   3'- cCCG--UGCGGA--AGCUGC-CGAAguuACG- -5'
18751 5' -53.4 NC_004683.1 + 5484 0.68 0.705085
Target:  5'- uGGCACGgCguguccUCGGCGGCcgugCAGUGg -3'
miRNA:   3'- cCCGUGCgGa-----AGCUGCCGaa--GUUACg -5'
18751 5' -53.4 NC_004683.1 + 10600 0.68 0.713736
Target:  5'- aGGCGCGCCgcgcugaggugCgGGCGGUccgCGAUGCc -3'
miRNA:   3'- cCCGUGCGGaa---------G-CUGCCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 45553 0.68 0.715891
Target:  5'- gGGGCGCGUCgcgcgCGAgaaGuGCUgcggCGGUGCg -3'
miRNA:   3'- -CCCGUGCGGaa---GCUg--C-CGAa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 17999 0.68 0.715891
Target:  5'- cGGUgaACGCCgacggCGACGGgUUCGaccugGUGCc -3'
miRNA:   3'- cCCG--UGCGGaa---GCUGCCgAAGU-----UACG- -5'
18751 5' -53.4 NC_004683.1 + 56196 0.68 0.715891
Target:  5'- aGGGCAuCGUCUUCGAggacgaUGGCccaUUCAcugGCg -3'
miRNA:   3'- -CCCGU-GCGGAAGCU------GCCG---AAGUua-CG- -5'
18751 5' -53.4 NC_004683.1 + 31985 0.68 0.726612
Target:  5'- gGGGUACcaacCCgcgGGCGGCUgaggCGGUGCg -3'
miRNA:   3'- -CCCGUGc---GGaagCUGCCGAa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 40875 0.68 0.726612
Target:  5'- cGGCcuCGCCgUCGGCGaGCgcgUCGGUcGCg -3'
miRNA:   3'- cCCGu-GCGGaAGCUGC-CGa--AGUUA-CG- -5'
18751 5' -53.4 NC_004683.1 + 4947 0.68 0.726612
Target:  5'- cGGCGCGCUccaGGCGGCU-CA-UGUg -3'
miRNA:   3'- cCCGUGCGGaagCUGCCGAaGUuACG- -5'
18751 5' -53.4 NC_004683.1 + 22700 0.68 0.737238
Target:  5'- cGGGCucuACGCCgguUCGACGcGCgUCg--GCa -3'
miRNA:   3'- -CCCG---UGCGGa--AGCUGC-CGaAGuuaCG- -5'
18751 5' -53.4 NC_004683.1 + 22340 0.67 0.747757
Target:  5'- -cGCACGCUcUCGGgaucgGGgUUCAAUGCg -3'
miRNA:   3'- ccCGUGCGGaAGCUg----CCgAAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 47572 0.67 0.747757
Target:  5'- gGGGCGuCcCCUgCGACGGCUgcgugGCg -3'
miRNA:   3'- -CCCGU-GcGGAaGCUGCCGAaguuaCG- -5'
18751 5' -53.4 NC_004683.1 + 9245 0.67 0.747757
Target:  5'- -cGCugGCCggCGACGGCUcguaagacccUCGcgggGCg -3'
miRNA:   3'- ccCGugCGGaaGCUGCCGA----------AGUua--CG- -5'
18751 5' -53.4 NC_004683.1 + 25730 0.67 0.758157
Target:  5'- uGGGCAggaccgccacCGCgaUCGGCGGCagcUCGcgGUa -3'
miRNA:   3'- -CCCGU----------GCGgaAGCUGCCGa--AGUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.