Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18751 | 5' | -53.4 | NC_004683.1 | + | 24043 | 0.67 | 0.798336 |
Target: 5'- gGGGCACguaGCCgugcUCGACGaGCUUggcCAggGUg -3' miRNA: 3'- -CCCGUG---CGGa---AGCUGC-CGAA---GUuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 26141 | 0.67 | 0.788527 |
Target: 5'- cGGGUAuCGCCggcgCGGCGGUcUCGcUGa -3' miRNA: 3'- -CCCGU-GCGGaa--GCUGCCGaAGUuACg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 1441 | 0.67 | 0.788527 |
Target: 5'- aGGCGCucgcgGCCgaacUCGGCGGgaUCGA-GCg -3' miRNA: 3'- cCCGUG-----CGGa---AGCUGCCgaAGUUaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 19747 | 0.67 | 0.778553 |
Target: 5'- uGGCGaGCgCUUCGGCGGCgUCGuUGa -3' miRNA: 3'- cCCGUgCG-GAAGCUGCCGaAGUuACg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 54453 | 0.67 | 0.768426 |
Target: 5'- cGGGCAUGCgUUgGGuCGGgUUC--UGCa -3' miRNA: 3'- -CCCGUGCGgAAgCU-GCCgAAGuuACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 25730 | 0.67 | 0.758157 |
Target: 5'- uGGGCAggaccgccacCGCgaUCGGCGGCagcUCGcgGUa -3' miRNA: 3'- -CCCGU----------GCGgaAGCUGCCGa--AGUuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 22340 | 0.67 | 0.747757 |
Target: 5'- -cGCACGCUcUCGGgaucgGGgUUCAAUGCg -3' miRNA: 3'- ccCGUGCGGaAGCUg----CCgAAGUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 47572 | 0.67 | 0.747757 |
Target: 5'- gGGGCGuCcCCUgCGACGGCUgcgugGCg -3' miRNA: 3'- -CCCGU-GcGGAaGCUGCCGAaguuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 9245 | 0.67 | 0.747757 |
Target: 5'- -cGCugGCCggCGACGGCUcguaagacccUCGcgggGCg -3' miRNA: 3'- ccCGugCGGaaGCUGCCGA----------AGUua--CG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 22700 | 0.68 | 0.737238 |
Target: 5'- cGGGCucuACGCCgguUCGACGcGCgUCg--GCa -3' miRNA: 3'- -CCCG---UGCGGa--AGCUGC-CGaAGuuaCG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 4947 | 0.68 | 0.726612 |
Target: 5'- cGGCGCGCUccaGGCGGCU-CA-UGUg -3' miRNA: 3'- cCCGUGCGGaagCUGCCGAaGUuACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 31985 | 0.68 | 0.726612 |
Target: 5'- gGGGUACcaacCCgcgGGCGGCUgaggCGGUGCg -3' miRNA: 3'- -CCCGUGc---GGaagCUGCCGAa---GUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 40875 | 0.68 | 0.726612 |
Target: 5'- cGGCcuCGCCgUCGGCGaGCgcgUCGGUcGCg -3' miRNA: 3'- cCCGu-GCGGaAGCUGC-CGa--AGUUA-CG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 56196 | 0.68 | 0.715891 |
Target: 5'- aGGGCAuCGUCUUCGAggacgaUGGCccaUUCAcugGCg -3' miRNA: 3'- -CCCGU-GCGGAAGCU------GCCG---AAGUua-CG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 17999 | 0.68 | 0.715891 |
Target: 5'- cGGUgaACGCCgacggCGACGGgUUCGaccugGUGCc -3' miRNA: 3'- cCCG--UGCGGaa---GCUGCCgAAGU-----UACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 45553 | 0.68 | 0.715891 |
Target: 5'- gGGGCGCGUCgcgcgCGAgaaGuGCUgcggCGGUGCg -3' miRNA: 3'- -CCCGUGCGGaa---GCUg--C-CGAa---GUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 10600 | 0.68 | 0.713736 |
Target: 5'- aGGCGCGCCgcgcugaggugCgGGCGGUccgCGAUGCc -3' miRNA: 3'- cCCGUGCGGaa---------G-CUGCCGaa-GUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 12794 | 0.68 | 0.705085 |
Target: 5'- cGGGaUACGCCgcUGGCGGauacccgggCGAUGCg -3' miRNA: 3'- -CCC-GUGCGGaaGCUGCCgaa------GUUACG- -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 5484 | 0.68 | 0.705085 |
Target: 5'- uGGCACGgCguguccUCGGCGGCcgugCAGUGg -3' miRNA: 3'- cCCGUGCgGa-----AGCUGCCGaa--GUUACg -5' |
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18751 | 5' | -53.4 | NC_004683.1 | + | 10433 | 0.68 | 0.705085 |
Target: 5'- cGGCgaACGCCUucUCGGCGcGCUU---UGCg -3' miRNA: 3'- cCCG--UGCGGA--AGCUGC-CGAAguuACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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