miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 5' -53.4 NC_004683.1 + 993 1.15 0.000618
Target:  5'- cGGGCACGCCUUCGACGGCUUCAAUGCg -3'
miRNA:   3'- -CCCGUGCGGAAGCUGCCGAAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 47969 0.75 0.355098
Target:  5'- gGGGCACuaCUUCGagcGCGGgUUCGacGUGCa -3'
miRNA:   3'- -CCCGUGcgGAAGC---UGCCgAAGU--UACG- -5'
18751 5' -53.4 NC_004683.1 + 10467 0.75 0.355098
Target:  5'- cGGGCgucggACGCCUaCGACaaGGCgcgCGAUGCu -3'
miRNA:   3'- -CCCG-----UGCGGAaGCUG--CCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 7048 0.74 0.381295
Target:  5'- uGGGCGCGCCggcCGACGaGCUgcacCAccGCc -3'
miRNA:   3'- -CCCGUGCGGaa-GCUGC-CGAa---GUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 23088 0.74 0.399462
Target:  5'- cGGCGCGCUcUCGugGGCgUUCGccaGCg -3'
miRNA:   3'- cCCGUGCGGaAGCugCCG-AAGUua-CG- -5'
18751 5' -53.4 NC_004683.1 + 56901 0.73 0.418172
Target:  5'- uGGCGCGCCUUCcGGCcguGGCU-CGGuUGCa -3'
miRNA:   3'- cCCGUGCGGAAG-CUG---CCGAaGUU-ACG- -5'
18751 5' -53.4 NC_004683.1 + 16220 0.73 0.427726
Target:  5'- -cGUACGCCcagUCGugGGUgUCGAUGUa -3'
miRNA:   3'- ccCGUGCGGa--AGCugCCGaAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 53698 0.73 0.428688
Target:  5'- cGGGCcugaucGCGCCgcagcUCGGCGGCgaagacgcggccggCGGUGCg -3'
miRNA:   3'- -CCCG------UGCGGa----AGCUGCCGaa------------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 13354 0.73 0.437407
Target:  5'- cGGGCuguagauaucCGCUgcggUCGACGGCgacgcCGAUGCg -3'
miRNA:   3'- -CCCGu---------GCGGa---AGCUGCCGaa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 20416 0.73 0.447212
Target:  5'- gGGGCG-GCCaaCGGCGGCaccggCGGUGCa -3'
miRNA:   3'- -CCCGUgCGGaaGCUGCCGaa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 318 0.72 0.477338
Target:  5'- cGGGCA-GCag-CGGCGGCaUCGcgGCg -3'
miRNA:   3'- -CCCGUgCGgaaGCUGCCGaAGUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 56802 0.72 0.507383
Target:  5'- cGGGCuugaugcGCGCCUcgUCGG-GGCUcaguccguucUCGAUGCa -3'
miRNA:   3'- -CCCG-------UGCGGA--AGCUgCCGA----------AGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 41302 0.71 0.51899
Target:  5'- cGGGCuuaugcuuggcgGCGUCcUCGGCGGcCUUCGccGCg -3'
miRNA:   3'- -CCCG------------UGCGGaAGCUGCC-GAAGUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 51074 0.71 0.544662
Target:  5'- cGGGCagacgagaccccucgGCGCCUU-GGCGGCg--GGUGCg -3'
miRNA:   3'- -CCCG---------------UGCGGAAgCUGCCGaagUUACG- -5'
18751 5' -53.4 NC_004683.1 + 267 0.71 0.551146
Target:  5'- gGGGCugGUCg-CGACGGUggUCAAggaGCu -3'
miRNA:   3'- -CCCGugCGGaaGCUGCCGa-AGUUa--CG- -5'
18751 5' -53.4 NC_004683.1 + 10665 0.71 0.551146
Target:  5'- cGGCGCGCCUucUCGACccgcucagccuGaGCgaCGAUGCg -3'
miRNA:   3'- cCCGUGCGGA--AGCUG-----------C-CGaaGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 39897 0.71 0.562004
Target:  5'- cGGGUugGCCggaCGACGGUcuacagcugUUCAAacgggGCg -3'
miRNA:   3'- -CCCGugCGGaa-GCUGCCG---------AAGUUa----CG- -5'
18751 5' -53.4 NC_004683.1 + 6742 0.7 0.572918
Target:  5'- cGGCGCGCCgcggccaGcACGGCgUCGAUGg -3'
miRNA:   3'- cCCGUGCGGaag----C-UGCCGaAGUUACg -5'
18751 5' -53.4 NC_004683.1 + 40312 0.7 0.594887
Target:  5'- aGGGCAuCGCCg-CGGCGGUgaccCGAUGa -3'
miRNA:   3'- -CCCGU-GCGGaaGCUGCCGaa--GUUACg -5'
18751 5' -53.4 NC_004683.1 + 19155 0.7 0.605924
Target:  5'- aGGCGCGCCgUCGGUGGCgUCGuggGUg -3'
miRNA:   3'- cCCGUGCGGaAGCUGCCGaAGUua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.