miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 5' -53.4 NC_004683.1 + 56901 0.73 0.418172
Target:  5'- uGGCGCGCCUUCcGGCcguGGCU-CGGuUGCa -3'
miRNA:   3'- cCCGUGCGGAAG-CUG---CCGAaGUU-ACG- -5'
18751 5' -53.4 NC_004683.1 + 56802 0.72 0.507383
Target:  5'- cGGGCuugaugcGCGCCUcgUCGG-GGCUcaguccguucUCGAUGCa -3'
miRNA:   3'- -CCCG-------UGCGGA--AGCUgCCGA----------AGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 56394 0.66 0.826664
Target:  5'- -uGCAUGgCguaggCGACGGCgugCAGUGUg -3'
miRNA:   3'- ccCGUGCgGaa---GCUGCCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 56196 0.68 0.715891
Target:  5'- aGGGCAuCGUCUUCGAggacgaUGGCccaUUCAcugGCg -3'
miRNA:   3'- -CCCGU-GCGGAAGCU------GCCG---AAGUua-CG- -5'
18751 5' -53.4 NC_004683.1 + 54453 0.67 0.768426
Target:  5'- cGGGCAUGCgUUgGGuCGGgUUC--UGCa -3'
miRNA:   3'- -CCCGUGCGgAAgCU-GCCgAAGuuACG- -5'
18751 5' -53.4 NC_004683.1 + 53698 0.73 0.428688
Target:  5'- cGGGCcugaucGCGCCgcagcUCGGCGGCgaagacgcggccggCGGUGCg -3'
miRNA:   3'- -CCCG------UGCGGa----AGCUGCCGaa------------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 51848 0.66 0.842783
Target:  5'- aGGGCcuCGCgUUUGGCGGCgaaguacucggCGAggGCg -3'
miRNA:   3'- -CCCGu-GCGgAAGCUGCCGaa---------GUUa-CG- -5'
18751 5' -53.4 NC_004683.1 + 51617 0.66 0.833914
Target:  5'- cGGCGCGCCUgccgugcgUGAUGGaucaggucgcCGAUGCc -3'
miRNA:   3'- cCCGUGCGGAa-------GCUGCCgaa-------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 51260 0.7 0.628056
Target:  5'- gGGGCGCGUUcUCGGCGGCg------- -3'
miRNA:   3'- -CCCGUGCGGaAGCUGCCGaaguuacg -5'
18751 5' -53.4 NC_004683.1 + 51074 0.71 0.544662
Target:  5'- cGGGCagacgagaccccucgGCGCCUU-GGCGGCg--GGUGCg -3'
miRNA:   3'- -CCCG---------------UGCGGAAgCUGCCGaagUUACG- -5'
18751 5' -53.4 NC_004683.1 + 47972 0.66 0.84453
Target:  5'- gGGGCugGCUg--GACucaGCUUC-GUGCa -3'
miRNA:   3'- -CCCGugCGGaagCUGc--CGAAGuUACG- -5'
18751 5' -53.4 NC_004683.1 + 47969 0.75 0.355098
Target:  5'- gGGGCACuaCUUCGagcGCGGgUUCGacGUGCa -3'
miRNA:   3'- -CCCGUGcgGAAGC---UGCCgAAGU--UACG- -5'
18751 5' -53.4 NC_004683.1 + 47742 0.66 0.817415
Target:  5'- aGGCACacaCCgUCGucGCGGCgUUCGAUGUc -3'
miRNA:   3'- cCCGUGc--GGaAGC--UGCCG-AAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 47572 0.67 0.747757
Target:  5'- gGGGCGuCcCCUgCGACGGCUgcgugGCg -3'
miRNA:   3'- -CCCGU-GcGGAaGCUGCCGAaguuaCG- -5'
18751 5' -53.4 NC_004683.1 + 46220 0.66 0.84453
Target:  5'- uGGCcaucagccACGCCUggaACGGCUgcCAGUGCc -3'
miRNA:   3'- cCCG--------UGCGGAagcUGCCGAa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 45553 0.68 0.715891
Target:  5'- gGGGCGCGUCgcgcgCGAgaaGuGCUgcggCGGUGCg -3'
miRNA:   3'- -CCCGUGCGGaa---GCUg--C-CGAa---GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 41302 0.71 0.51899
Target:  5'- cGGGCuuaugcuuggcgGCGUCcUCGGCGGcCUUCGccGCg -3'
miRNA:   3'- -CCCG------------UGCGGaAGCUGCC-GAAGUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 40875 0.68 0.726612
Target:  5'- cGGCcuCGCCgUCGGCGaGCgcgUCGGUcGCg -3'
miRNA:   3'- cCCGu-GCGGaAGCUGC-CGa--AGUUA-CG- -5'
18751 5' -53.4 NC_004683.1 + 40312 0.7 0.594887
Target:  5'- aGGGCAuCGCCg-CGGCGGUgaccCGAUGa -3'
miRNA:   3'- -CCCGU-GCGGaaGCUGCCGaa--GUUACg -5'
18751 5' -53.4 NC_004683.1 + 39897 0.71 0.562004
Target:  5'- cGGGUugGCCggaCGACGGUcuacagcugUUCAAacgggGCg -3'
miRNA:   3'- -CCCGugCGGaa-GCUGCCG---------AAGUUa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.