miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 1170 0.96 0.006307
Target:  5'- cGUGGCAU-CCGACGAGCCAAUCAGCAa -3'
miRNA:   3'- -CACCGUAcGGCUGCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 41039 0.81 0.08171
Target:  5'- -cGGCGccuaccucGCCGGCGAGCUGAUCAGCAg -3'
miRNA:   3'- caCCGUa-------CGGCUGCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 45583 0.8 0.094399
Target:  5'- aGUGcaGCGUGgCGACGAGCCGGUCGGUg -3'
miRNA:   3'- -CAC--CGUACgGCUGCUCGGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 41031 0.76 0.185264
Target:  5'- -cGGCGUgGCCGACGGGCaacggcggcgCGGUCAGCu -3'
miRNA:   3'- caCCGUA-CGGCUGCUCG----------GUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 53836 0.74 0.236466
Target:  5'- uUGGCGaGCCGugcaguccagcugauCGGGCCGGUCGGCGu -3'
miRNA:   3'- cACCGUaCGGCu--------------GCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 20160 0.74 0.248552
Target:  5'- gGUGGCGUGCaCGAuCGGGCCcg-CGGCc -3'
miRNA:   3'- -CACCGUACG-GCU-GCUCGGuuaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 33494 0.74 0.248552
Target:  5'- -gGGCAggUGCCGACGuucAGCCA-UCGGCu -3'
miRNA:   3'- caCCGU--ACGGCUGC---UCGGUuAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 35603 0.73 0.261822
Target:  5'- -cGGCAuaUGCCaucgGACGGGCCAAacgCAGCGu -3'
miRNA:   3'- caCCGU--ACGG----CUGCUCGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 30082 0.73 0.274956
Target:  5'- -gGGCA-GCCGACgcagugagcguugGAGCCGAUCuGCAc -3'
miRNA:   3'- caCCGUaCGGCUG-------------CUCGGUUAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 3288 0.73 0.282798
Target:  5'- -aGGCccGCCGACGccuGGCCGA-CGGCAc -3'
miRNA:   3'- caCCGuaCGGCUGC---UCGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 53930 0.73 0.282798
Target:  5'- aUGGCAaaggacaugGCCGACGAgGCCGGUCuGCc -3'
miRNA:   3'- cACCGUa--------CGGCUGCU-CGGUUAGuCGu -5'
18752 5' -55.7 NC_004683.1 + 10729 0.73 0.297509
Target:  5'- cUGGUAUcgGCgCGGCGGGCCAAgacgCGGCGa -3'
miRNA:   3'- cACCGUA--CG-GCUGCUCGGUUa---GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 17809 0.72 0.312807
Target:  5'- -cGGCgAUGCCGGUGAuGCCcAUCAGCGg -3'
miRNA:   3'- caCCG-UACGGCUGCU-CGGuUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 28631 0.72 0.320676
Target:  5'- uUGGCG-GCCGACG-GCCGAgacuuggCGGCGc -3'
miRNA:   3'- cACCGUaCGGCUGCuCGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 49661 0.72 0.336857
Target:  5'- cUGGCAagGCCGACGcgugGGCCGAcCAGUg -3'
miRNA:   3'- cACCGUa-CGGCUGC----UCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 12102 0.72 0.336857
Target:  5'- -cGGCAUGCCGuAUGA-CCAAgcaCAGCAg -3'
miRNA:   3'- caCCGUACGGC-UGCUcGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10538 0.71 0.345168
Target:  5'- -aGGCGU-CCGACGc-CCGAUCGGCAa -3'
miRNA:   3'- caCCGUAcGGCUGCucGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 23920 0.7 0.398066
Target:  5'- cGUGGCG-GCCGACGgcaucgucgGGCCGGUCaccuGGCc -3'
miRNA:   3'- -CACCGUaCGGCUGC---------UCGGUUAG----UCGu -5'
18752 5' -55.7 NC_004683.1 + 10955 0.7 0.416818
Target:  5'- -cGGCaAUGCCGuugGCGAGC-AAUCGGCc -3'
miRNA:   3'- caCCG-UACGGC---UGCUCGgUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 26974 0.7 0.426394
Target:  5'- -cGGCcgaccucGCCGAUGAcGCCGucGUCAGCAu -3'
miRNA:   3'- caCCGua-----CGGCUGCU-CGGU--UAGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.