miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 1170 0.96 0.006307
Target:  5'- cGUGGCAU-CCGACGAGCCAAUCAGCAa -3'
miRNA:   3'- -CACCGUAcGGCUGCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2145 0.7 0.445931
Target:  5'- cGUGGcCGUGCUGGCGGGCCugg-GGUg -3'
miRNA:   3'- -CACC-GUACGGCUGCUCGGuuagUCGu -5'
18752 5' -55.7 NC_004683.1 + 2485 0.66 0.671852
Target:  5'- -aGGCGccaauuccGUCGACGGGCCGGcCAGUg -3'
miRNA:   3'- caCCGUa-------CGGCUGCUCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 2530 0.67 0.616311
Target:  5'- gGUGGCAgcgcuUGCgCGACGggaAGCCGucggacacguUCGGCAg -3'
miRNA:   3'- -CACCGU-----ACG-GCUGC---UCGGUu---------AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2753 0.66 0.649675
Target:  5'- -cGGCG-GCCGcgGCGAGCUcggCGGCGg -3'
miRNA:   3'- caCCGUaCGGC--UGCUCGGuuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2912 0.69 0.486441
Target:  5'- -cGGCAUGUCGugGcugacGCCGAUCcuGCGc -3'
miRNA:   3'- caCCGUACGGCugCu----CGGUUAGu-CGU- -5'
18752 5' -55.7 NC_004683.1 + 3057 0.66 0.627432
Target:  5'- aGUGG---GCCGACGAgGUCAA-CAGCAa -3'
miRNA:   3'- -CACCguaCGGCUGCU-CGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 3288 0.73 0.282798
Target:  5'- -aGGCccGCCGACGccuGGCCGA-CGGCAc -3'
miRNA:   3'- caCCGuaCGGCUGC---UCGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 3379 0.68 0.539374
Target:  5'- gGUGuGCuGUGCCGuCG-GCCAggcGUCGGCGg -3'
miRNA:   3'- -CAC-CG-UACGGCuGCuCGGU---UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 3489 0.66 0.649675
Target:  5'- -cGGCggGCU-ACGAGCCGgaAUCGGUg -3'
miRNA:   3'- caCCGuaCGGcUGCUCGGU--UAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 4994 0.67 0.605205
Target:  5'- -aGGCuUGCCGAucugcucgUGAGUCGAUCGGaCGc -3'
miRNA:   3'- caCCGuACGGCU--------GCUCGGUUAGUC-GU- -5'
18752 5' -55.7 NC_004683.1 + 5921 0.66 0.627432
Target:  5'- -aGGCGccuUGgCGGCGGuGCCGcgCGGCGa -3'
miRNA:   3'- caCCGU---ACgGCUGCU-CGGUuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 7415 0.68 0.507342
Target:  5'- -gGGCGcgcUGCCacauuccacaucGACGGGCCGAUCAuGCc -3'
miRNA:   3'- caCCGU---ACGG------------CUGCUCGGUUAGU-CGu -5'
18752 5' -55.7 NC_004683.1 + 8965 0.67 0.605205
Target:  5'- -cGGCGagGCCGACGgauuAGCCAGcCGGUc -3'
miRNA:   3'- caCCGUa-CGGCUGC----UCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 10213 0.68 0.561107
Target:  5'- uGUGGgGUGCCGGCGuacuuGCUGGcgCGGUAg -3'
miRNA:   3'- -CACCgUACGGCUGCu----CGGUUa-GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10538 0.71 0.345168
Target:  5'- -aGGCGU-CCGACGc-CCGAUCGGCAa -3'
miRNA:   3'- caCCGUAcGGCUGCucGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10729 0.73 0.297509
Target:  5'- cUGGUAUcgGCgCGGCGGGCCAAgacgCGGCGa -3'
miRNA:   3'- cACCGUA--CG-GCUGCUCGGUUa---GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10955 0.7 0.416818
Target:  5'- -cGGCaAUGCCGuugGCGAGC-AAUCGGCc -3'
miRNA:   3'- caCCG-UACGGC---UGCUCGgUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 11593 0.69 0.493711
Target:  5'- -cGGCgccgaacgcugcucGUGCgGugGGGCCAccuUCAGCGa -3'
miRNA:   3'- caCCG--------------UACGgCugCUCGGUu--AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 11781 0.68 0.539374
Target:  5'- aGUGGCugGCCGACucGUCGAUCGGaCGg -3'
miRNA:   3'- -CACCGuaCGGCUGcuCGGUUAGUC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.