miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 8965 0.67 0.605205
Target:  5'- -cGGCGagGCCGACGgauuAGCCAGcCGGUc -3'
miRNA:   3'- caCCGUa-CGGCUGC----UCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 31536 0.69 0.48231
Target:  5'- -cGGCGUcggccacGCCGGCGAGCuCGGuuggguccgacgacUCGGCAa -3'
miRNA:   3'- caCCGUA-------CGGCUGCUCG-GUU--------------AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2912 0.69 0.486441
Target:  5'- -cGGCAUGUCGugGcugacGCCGAUCcuGCGc -3'
miRNA:   3'- caCCGUACGGCugCu----CGGUUAGu-CGU- -5'
18752 5' -55.7 NC_004683.1 + 7415 0.68 0.507342
Target:  5'- -gGGCGcgcUGCCacauuccacaucGACGGGCCGAUCAuGCc -3'
miRNA:   3'- caCCGU---ACGG------------CUGCUCGGUUAGU-CGu -5'
18752 5' -55.7 NC_004683.1 + 53735 0.68 0.507342
Target:  5'- -aGuGCAcGCCGACcGGcCCGAUCAGCu -3'
miRNA:   3'- caC-CGUaCGGCUGcUC-GGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 11781 0.68 0.539374
Target:  5'- aGUGGCugGCCGACucGUCGAUCGGaCGg -3'
miRNA:   3'- -CACCGuaCGGCUGcuCGGUUAGUC-GU- -5'
18752 5' -55.7 NC_004683.1 + 12249 0.68 0.539374
Target:  5'- -cGGCGUGCCGAUGcccggcGCUggUggCGGCAu -3'
miRNA:   3'- caCCGUACGGCUGCu-----CGGuuA--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 34515 0.68 0.550207
Target:  5'- uGUGGCGaugagaGCCGACaacaguGCCAugAUCGGCAu -3'
miRNA:   3'- -CACCGUa-----CGGCUGcu----CGGU--UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 52788 0.67 0.602986
Target:  5'- -aGGCGcugcucgccgagGCCGACGAGUacucguUCAGCAu -3'
miRNA:   3'- caCCGUa-----------CGGCUGCUCGguu---AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 45062 0.69 0.465958
Target:  5'- cUGGC--GCUGGagUGGGCCAAUCAGCc -3'
miRNA:   3'- cACCGuaCGGCU--GCUCGGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 2145 0.7 0.445931
Target:  5'- cGUGGcCGUGCUGGCGGGCCugg-GGUg -3'
miRNA:   3'- -CACC-GUACGGCUGCUCGGuuagUCGu -5'
18752 5' -55.7 NC_004683.1 + 23920 0.7 0.398066
Target:  5'- cGUGGCG-GCCGACGgcaucgucgGGCCGGUCaccuGGCc -3'
miRNA:   3'- -CACCGUaCGGCUGC---------UCGGUUAG----UCGu -5'
18752 5' -55.7 NC_004683.1 + 20160 0.74 0.248552
Target:  5'- gGUGGCGUGCaCGAuCGGGCCcg-CGGCc -3'
miRNA:   3'- -CACCGUACG-GCU-GCUCGGuuaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 33494 0.74 0.248552
Target:  5'- -gGGCAggUGCCGACGuucAGCCA-UCGGCu -3'
miRNA:   3'- caCCGU--ACGGCUGC---UCGGUuAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 3288 0.73 0.282798
Target:  5'- -aGGCccGCCGACGccuGGCCGA-CGGCAc -3'
miRNA:   3'- caCCGuaCGGCUGC---UCGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 53930 0.73 0.282798
Target:  5'- aUGGCAaaggacaugGCCGACGAgGCCGGUCuGCc -3'
miRNA:   3'- cACCGUa--------CGGCUGCU-CGGUUAGuCGu -5'
18752 5' -55.7 NC_004683.1 + 10729 0.73 0.297509
Target:  5'- cUGGUAUcgGCgCGGCGGGCCAAgacgCGGCGa -3'
miRNA:   3'- cACCGUA--CG-GCUGCUCGGUUa---GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 28631 0.72 0.320676
Target:  5'- uUGGCG-GCCGACG-GCCGAgacuuggCGGCGc -3'
miRNA:   3'- cACCGUaCGGCUGCuCGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12102 0.72 0.336857
Target:  5'- -cGGCAUGCCGuAUGA-CCAAgcaCAGCAg -3'
miRNA:   3'- caCCGUACGGC-UGCUcGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 49661 0.72 0.336857
Target:  5'- cUGGCAagGCCGACGcgugGGCCGAcCAGUg -3'
miRNA:   3'- cACCGUa-CGGCUGC----UCGGUUaGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.