miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 1170 0.96 0.006307
Target:  5'- cGUGGCAU-CCGACGAGCCAAUCAGCAa -3'
miRNA:   3'- -CACCGUAcGGCUGCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24281 0.67 0.572065
Target:  5'- -gGGCGU-CgGAUGAGCCGAgcuugagCGGCAg -3'
miRNA:   3'- caCCGUAcGgCUGCUCGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12913 0.67 0.605205
Target:  5'- -cGGCcUGCCggGACGuuGGCCAG-CAGCGc -3'
miRNA:   3'- caCCGuACGG--CUGC--UCGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 55784 0.66 0.682888
Target:  5'- -cGGUcgccGCCGACGAcGCCAGcguugagCAGCGg -3'
miRNA:   3'- caCCGua--CGGCUGCU-CGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 35603 0.73 0.261822
Target:  5'- -cGGCAuaUGCCaucgGACGGGCCAAacgCAGCGu -3'
miRNA:   3'- caCCGU--ACGG----CUGCUCGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 30082 0.73 0.274956
Target:  5'- -gGGCA-GCCGACgcagugagcguugGAGCCGAUCuGCAc -3'
miRNA:   3'- caCCGUaCGGCUG-------------CUCGGUUAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 10538 0.71 0.345168
Target:  5'- -aGGCGU-CCGACGc-CCGAUCGGCAa -3'
miRNA:   3'- caCCGUAcGGCUGCucGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10955 0.7 0.416818
Target:  5'- -cGGCaAUGCCGuugGCGAGC-AAUCGGCc -3'
miRNA:   3'- caCCG-UACGGC---UGCUCGgUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 51861 0.69 0.484374
Target:  5'- uGUGGaCAUGCCGA-GGGCCucgcguuuggCGGCGa -3'
miRNA:   3'- -CACC-GUACGGCUgCUCGGuua-------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24065 0.67 0.572065
Target:  5'- gGUGGCGUGgUGAuCGcGCCGAggGGCAc -3'
miRNA:   3'- -CACCGUACgGCU-GCuCGGUUagUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24931 0.68 0.522196
Target:  5'- -cGGguUGCCGAacuggaugacgccguUGAGCCGGUC-GCGg -3'
miRNA:   3'- caCCguACGGCU---------------GCUCGGUUAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 54707 0.69 0.476145
Target:  5'- uGUGGCGgcgaaUGuuGGCGAucGuCCGGUCGGCGa -3'
miRNA:   3'- -CACCGU-----ACggCUGCU--C-GGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 45583 0.8 0.094399
Target:  5'- aGUGcaGCGUGgCGACGAGCCGGUCGGUg -3'
miRNA:   3'- -CAC--CGUACgGCUGCUCGGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 3379 0.68 0.539374
Target:  5'- gGUGuGCuGUGCCGuCG-GCCAggcGUCGGCGg -3'
miRNA:   3'- -CAC-CG-UACGGCuGCuCGGU---UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 41031 0.76 0.185264
Target:  5'- -cGGCGUgGCCGACGGGCaacggcggcgCGGUCAGCu -3'
miRNA:   3'- caCCGUA-CGGCUGCUCG----------GUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 26974 0.7 0.426394
Target:  5'- -cGGCcgaccucGCCGAUGAcGCCGucGUCAGCAu -3'
miRNA:   3'- caCCGua-----CGGCUGCU-CGGU--UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10213 0.68 0.561107
Target:  5'- uGUGGgGUGCCGGCGuacuuGCUGGcgCGGUAg -3'
miRNA:   3'- -CACCgUACGGCUGCu----CGGUUa-GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 4994 0.67 0.605205
Target:  5'- -aGGCuUGCCGAucugcucgUGAGUCGAUCGGaCGc -3'
miRNA:   3'- caCCGuACGGCU--------GCUCGGUUAGUC-GU- -5'
18752 5' -55.7 NC_004683.1 + 53836 0.74 0.236466
Target:  5'- uUGGCGaGCCGugcaguccagcugauCGGGCCGGUCGGCGu -3'
miRNA:   3'- cACCGUaCGGCu--------------GCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 17809 0.72 0.312807
Target:  5'- -cGGCgAUGCCGGUGAuGCCcAUCAGCGg -3'
miRNA:   3'- caCCG-UACGGCUGCU-CGGuUAGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.