Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18752 | 5' | -55.7 | NC_004683.1 | + | 3288 | 0.73 | 0.282798 |
Target: 5'- -aGGCccGCCGACGccuGGCCGA-CGGCAc -3' miRNA: 3'- caCCGuaCGGCUGC---UCGGUUaGUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 53930 | 0.73 | 0.282798 |
Target: 5'- aUGGCAaaggacaugGCCGACGAgGCCGGUCuGCc -3' miRNA: 3'- cACCGUa--------CGGCUGCU-CGGUUAGuCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 10729 | 0.73 | 0.297509 |
Target: 5'- cUGGUAUcgGCgCGGCGGGCCAAgacgCGGCGa -3' miRNA: 3'- cACCGUA--CG-GCUGCUCGGUUa---GUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 28631 | 0.72 | 0.320676 |
Target: 5'- uUGGCG-GCCGACG-GCCGAgacuuggCGGCGc -3' miRNA: 3'- cACCGUaCGGCUGCuCGGUUa------GUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 12102 | 0.72 | 0.336857 |
Target: 5'- -cGGCAUGCCGuAUGA-CCAAgcaCAGCAg -3' miRNA: 3'- caCCGUACGGC-UGCUcGGUUa--GUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 49661 | 0.72 | 0.336857 |
Target: 5'- cUGGCAagGCCGACGcgugGGCCGAcCAGUg -3' miRNA: 3'- cACCGUa-CGGCUGC----UCGGUUaGUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 7415 | 0.68 | 0.507342 |
Target: 5'- -gGGCGcgcUGCCacauuccacaucGACGGGCCGAUCAuGCc -3' miRNA: 3'- caCCGU---ACGG------------CUGCUCGGUUAGU-CGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 2912 | 0.69 | 0.486441 |
Target: 5'- -cGGCAUGUCGugGcugacGCCGAUCcuGCGc -3' miRNA: 3'- caCCGUACGGCugCu----CGGUUAGu-CGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 31536 | 0.69 | 0.48231 |
Target: 5'- -cGGCGUcggccacGCCGGCGAGCuCGGuuggguccgacgacUCGGCAa -3' miRNA: 3'- caCCGUA-------CGGCUGCUCG-GUU--------------AGUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 45062 | 0.69 | 0.465958 |
Target: 5'- cUGGC--GCUGGagUGGGCCAAUCAGCc -3' miRNA: 3'- cACCGuaCGGCU--GCUCGGUUAGUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 2145 | 0.7 | 0.445931 |
Target: 5'- cGUGGcCGUGCUGGCGGGCCugg-GGUg -3' miRNA: 3'- -CACC-GUACGGCUGCUCGGuuagUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 23920 | 0.7 | 0.398066 |
Target: 5'- cGUGGCG-GCCGACGgcaucgucgGGCCGGUCaccuGGCc -3' miRNA: 3'- -CACCGUaCGGCUGC---------UCGGUUAG----UCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 10538 | 0.71 | 0.345168 |
Target: 5'- -aGGCGU-CCGACGc-CCGAUCGGCAa -3' miRNA: 3'- caCCGUAcGGCUGCucGGUUAGUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 17809 | 0.72 | 0.312807 |
Target: 5'- -cGGCgAUGCCGGUGAuGCCcAUCAGCGg -3' miRNA: 3'- caCCG-UACGGCUGCU-CGGuUAGUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 30082 | 0.73 | 0.274956 |
Target: 5'- -gGGCA-GCCGACgcagugagcguugGAGCCGAUCuGCAc -3' miRNA: 3'- caCCGUaCGGCUG-------------CUCGGUUAGuCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 35603 | 0.73 | 0.261822 |
Target: 5'- -cGGCAuaUGCCaucgGACGGGCCAAacgCAGCGu -3' miRNA: 3'- caCCGU--ACGG----CUGCUCGGUUa--GUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 53836 | 0.74 | 0.236466 |
Target: 5'- uUGGCGaGCCGugcaguccagcugauCGGGCCGGUCGGCGu -3' miRNA: 3'- cACCGUaCGGCu--------------GCUCGGUUAGUCGU- -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 41031 | 0.76 | 0.185264 |
Target: 5'- -cGGCGUgGCCGACGGGCaacggcggcgCGGUCAGCu -3' miRNA: 3'- caCCGUA-CGGCUGCUCG----------GUUAGUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 45583 | 0.8 | 0.094399 |
Target: 5'- aGUGcaGCGUGgCGACGAGCCGGUCGGUg -3' miRNA: 3'- -CAC--CGUACgGCUGCUCGGUUAGUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 55784 | 0.66 | 0.682888 |
Target: 5'- -cGGUcgccGCCGACGAcGCCAGcguugagCAGCGg -3' miRNA: 3'- caCCGua--CGGCUGCU-CGGUUa------GUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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