miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 12102 0.72 0.336857
Target:  5'- -cGGCAUGCCGuAUGA-CCAAgcaCAGCAg -3'
miRNA:   3'- caCCGUACGGC-UGCUcGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12167 0.66 0.649675
Target:  5'- -cGGCAUGCCGGggcCGcGCuCAGgugggCGGCAg -3'
miRNA:   3'- caCCGUACGGCU---GCuCG-GUUa----GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12249 0.68 0.539374
Target:  5'- -cGGCGUGCCGAUGcccggcGCUggUggCGGCAu -3'
miRNA:   3'- caCCGUACGGCUGCu-----CGGuuA--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12913 0.67 0.605205
Target:  5'- -cGGCcUGCCggGACGuuGGCCAG-CAGCGc -3'
miRNA:   3'- caCCGuACGG--CUGC--UCGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 15688 0.66 0.660777
Target:  5'- -cGGCGUGCCcGCG-GCCAcgaucuucgaGUCuGCGu -3'
miRNA:   3'- caCCGUACGGcUGCuCGGU----------UAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 15933 0.67 0.616311
Target:  5'- -cGGCcugGCCGAUGuuGCCGugCAGCAg -3'
miRNA:   3'- caCCGua-CGGCUGCu-CGGUuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 17809 0.72 0.312807
Target:  5'- -cGGCgAUGCCGGUGAuGCCcAUCAGCGg -3'
miRNA:   3'- caCCG-UACGGCUGCU-CGGuUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 18264 0.67 0.616311
Target:  5'- -cGGCgAUGUccggCGACGAGCCGGUgaccgugaCGGCGg -3'
miRNA:   3'- caCCG-UACG----GCUGCUCGGUUA--------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 18553 0.66 0.657448
Target:  5'- -cGGCGucUGCCGcauccauucggggaGCGGGUCGGUCAcgGCAg -3'
miRNA:   3'- caCCGU--ACGGC--------------UGCUCGGUUAGU--CGU- -5'
18752 5' -55.7 NC_004683.1 + 20160 0.74 0.248552
Target:  5'- gGUGGCGUGCaCGAuCGGGCCcg-CGGCc -3'
miRNA:   3'- -CACCGUACG-GCU-GCUCGGuuaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 20230 0.66 0.681787
Target:  5'- cUGGCgcagucgGUGCCGGguauCG-GCgCGAUCAGCAa -3'
miRNA:   3'- cACCG-------UACGGCU----GCuCG-GUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 20395 0.66 0.626319
Target:  5'- cUGGCA-GCUGGCGgcgcacccggggcGGCCAAcggCGGCAc -3'
miRNA:   3'- cACCGUaCGGCUGC-------------UCGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 23920 0.7 0.398066
Target:  5'- cGUGGCG-GCCGACGgcaucgucgGGCCGGUCaccuGGCc -3'
miRNA:   3'- -CACCGUaCGGCUGC---------UCGGUUAG----UCGu -5'
18752 5' -55.7 NC_004683.1 + 24065 0.67 0.572065
Target:  5'- gGUGGCGUGgUGAuCGcGCCGAggGGCAc -3'
miRNA:   3'- -CACCGUACgGCU-GCuCGGUUagUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24281 0.67 0.572065
Target:  5'- -gGGCGU-CgGAUGAGCCGAgcuugagCGGCAg -3'
miRNA:   3'- caCCGUAcGgCUGCUCGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24931 0.68 0.522196
Target:  5'- -cGGguUGCCGAacuggaugacgccguUGAGCCGGUC-GCGg -3'
miRNA:   3'- caCCguACGGCU---------------GCUCGGUUAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 25575 0.67 0.616311
Target:  5'- -cGGCAacgGCaCGGCG-GCCGucgcaguucAUCAGCAg -3'
miRNA:   3'- caCCGUa--CG-GCUGCuCGGU---------UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 25958 0.66 0.638556
Target:  5'- -gGGC-UGuCCGACGGGCUGGgucUCGGUAu -3'
miRNA:   3'- caCCGuAC-GGCUGCUCGGUU---AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 26974 0.7 0.426394
Target:  5'- -cGGCcgaccucGCCGAUGAcGCCGucGUCAGCAu -3'
miRNA:   3'- caCCGua-----CGGCUGCU-CGGU--UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 27070 0.66 0.627432
Target:  5'- uGUGGCuUGCCGAgGuGGCCGGccugccCGGCGc -3'
miRNA:   3'- -CACCGuACGGCUgC-UCGGUUa-----GUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.