miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 55784 0.66 0.682888
Target:  5'- -cGGUcgccGCCGACGAcGCCAGcguugagCAGCGg -3'
miRNA:   3'- caCCGua--CGGCUGCU-CGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 54707 0.69 0.476145
Target:  5'- uGUGGCGgcgaaUGuuGGCGAucGuCCGGUCGGCGa -3'
miRNA:   3'- -CACCGU-----ACggCUGCU--C-GGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 53930 0.73 0.282798
Target:  5'- aUGGCAaaggacaugGCCGACGAgGCCGGUCuGCc -3'
miRNA:   3'- cACCGUa--------CGGCUGCU-CGGUUAGuCGu -5'
18752 5' -55.7 NC_004683.1 + 53836 0.74 0.236466
Target:  5'- uUGGCGaGCCGugcaguccagcugauCGGGCCGGUCGGCGu -3'
miRNA:   3'- cACCGUaCGGCu--------------GCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 53735 0.68 0.507342
Target:  5'- -aGuGCAcGCCGACcGGcCCGAUCAGCu -3'
miRNA:   3'- caC-CGUaCGGCUGcUC-GGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 53658 0.67 0.616311
Target:  5'- -cGGCGgugcgGCCGGCGucuGCCg--CGGCGu -3'
miRNA:   3'- caCCGUa----CGGCUGCu--CGGuuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 52788 0.67 0.602986
Target:  5'- -aGGCGcugcucgccgagGCCGACGAGUacucguUCAGCAu -3'
miRNA:   3'- caCCGUa-----------CGGCUGCUCGguu---AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 51861 0.69 0.484374
Target:  5'- uGUGGaCAUGCCGA-GGGCCucgcguuuggCGGCGa -3'
miRNA:   3'- -CACC-GUACGGCUgCUCGGuua-------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 49661 0.72 0.336857
Target:  5'- cUGGCAagGCCGACGcgugGGCCGAcCAGUg -3'
miRNA:   3'- cACCGUa-CGGCUGC----UCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 46920 0.67 0.605205
Target:  5'- -aGGCGcUGCCGACGuGCaCGAcgguggagCGGCAc -3'
miRNA:   3'- caCCGU-ACGGCUGCuCG-GUUa-------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 45583 0.8 0.094399
Target:  5'- aGUGcaGCGUGgCGACGAGCCGGUCGGUg -3'
miRNA:   3'- -CAC--CGUACgGCUGCUCGGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 45062 0.69 0.465958
Target:  5'- cUGGC--GCUGGagUGGGCCAAUCAGCc -3'
miRNA:   3'- cACCGuaCGGCU--GCUCGGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 42616 0.66 0.660777
Target:  5'- gGUGGUcgGCgaccgCGACGAcGCCcgcgacgaGAUCGGCGg -3'
miRNA:   3'- -CACCGuaCG-----GCUGCU-CGG--------UUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 41039 0.81 0.08171
Target:  5'- -cGGCGccuaccucGCCGGCGAGCUGAUCAGCAg -3'
miRNA:   3'- caCCGUa-------CGGCUGCUCGGUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 41031 0.76 0.185264
Target:  5'- -cGGCGUgGCCGACGGGCaacggcggcgCGGUCAGCu -3'
miRNA:   3'- caCCGUA-CGGCUGCUCG----------GUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 35603 0.73 0.261822
Target:  5'- -cGGCAuaUGCCaucgGACGGGCCAAacgCAGCGu -3'
miRNA:   3'- caCCGU--ACGG----CUGCUCGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 34515 0.68 0.550207
Target:  5'- uGUGGCGaugagaGCCGACaacaguGCCAugAUCGGCAu -3'
miRNA:   3'- -CACCGUa-----CGGCUGcu----CGGU--UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 33494 0.74 0.248552
Target:  5'- -gGGCAggUGCCGACGuucAGCCA-UCGGCu -3'
miRNA:   3'- caCCGU--ACGGCUGC---UCGGUuAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 31536 0.69 0.48231
Target:  5'- -cGGCGUcggccacGCCGGCGAGCuCGGuuggguccgacgacUCGGCAa -3'
miRNA:   3'- caCCGUA-------CGGCUGCUCG-GUU--------------AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 30853 0.67 0.616311
Target:  5'- cGUGcGCA-GCCGACGGugcGCCGGUgcggucgaCAGCGg -3'
miRNA:   3'- -CAC-CGUaCGGCUGCU---CGGUUA--------GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.