miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 15933 0.67 0.616311
Target:  5'- -cGGCcugGCCGAUGuuGCCGugCAGCAg -3'
miRNA:   3'- caCCGua-CGGCUGCu-CGGUuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 8965 0.67 0.605205
Target:  5'- -cGGCGagGCCGACGgauuAGCCAGcCGGUc -3'
miRNA:   3'- caCCGUa-CGGCUGC----UCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 46920 0.67 0.605205
Target:  5'- -aGGCGcUGCCGACGuGCaCGAcgguggagCGGCAc -3'
miRNA:   3'- caCCGU-ACGGCUGCuCG-GUUa-------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 4994 0.67 0.605205
Target:  5'- -aGGCuUGCCGAucugcucgUGAGUCGAUCGGaCGc -3'
miRNA:   3'- caCCGuACGGCU--------GCUCGGUUAGUC-GU- -5'
18752 5' -55.7 NC_004683.1 + 12913 0.67 0.605205
Target:  5'- -cGGCcUGCCggGACGuuGGCCAG-CAGCGc -3'
miRNA:   3'- caCCGuACGG--CUGC--UCGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 52788 0.67 0.602986
Target:  5'- -aGGCGcugcucgccgagGCCGACGAGUacucguUCAGCAu -3'
miRNA:   3'- caCCGUa-----------CGGCUGCUCGguu---AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24065 0.67 0.572065
Target:  5'- gGUGGCGUGgUGAuCGcGCCGAggGGCAc -3'
miRNA:   3'- -CACCGUACgGCU-GCuCGGUUagUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24281 0.67 0.572065
Target:  5'- -gGGCGU-CgGAUGAGCCGAgcuugagCGGCAg -3'
miRNA:   3'- caCCGUAcGgCUGCUCGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 10213 0.68 0.561107
Target:  5'- uGUGGgGUGCCGGCGuacuuGCUGGcgCGGUAg -3'
miRNA:   3'- -CACCgUACGGCUGCu----CGGUUa-GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 34515 0.68 0.550207
Target:  5'- uGUGGCGaugagaGCCGACaacaguGCCAugAUCGGCAu -3'
miRNA:   3'- -CACCGUa-----CGGCUGcu----CGGU--UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12249 0.68 0.539374
Target:  5'- -cGGCGUGCCGAUGcccggcGCUggUggCGGCAu -3'
miRNA:   3'- caCCGUACGGCUGCu-----CGGuuA--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 11781 0.68 0.539374
Target:  5'- aGUGGCugGCCGACucGUCGAUCGGaCGg -3'
miRNA:   3'- -CACCGuaCGGCUGcuCGGUUAGUC-GU- -5'
18752 5' -55.7 NC_004683.1 + 3379 0.68 0.539374
Target:  5'- gGUGuGCuGUGCCGuCG-GCCAggcGUCGGCGg -3'
miRNA:   3'- -CAC-CG-UACGGCuGCuCGGU---UAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 24931 0.68 0.522196
Target:  5'- -cGGguUGCCGAacuggaugacgccguUGAGCCGGUC-GCGg -3'
miRNA:   3'- caCCguACGGCU---------------GCUCGGUUAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 7415 0.68 0.507342
Target:  5'- -gGGCGcgcUGCCacauuccacaucGACGGGCCGAUCAuGCc -3'
miRNA:   3'- caCCGU---ACGG------------CUGCUCGGUUAGU-CGu -5'
18752 5' -55.7 NC_004683.1 + 53735 0.68 0.507342
Target:  5'- -aGuGCAcGCCGACcGGcCCGAUCAGCu -3'
miRNA:   3'- caC-CGUaCGGCUGcUC-GGUUAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 11593 0.69 0.493711
Target:  5'- -cGGCgccgaacgcugcucGUGCgGugGGGCCAccuUCAGCGa -3'
miRNA:   3'- caCCG--------------UACGgCugCUCGGUu--AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2912 0.69 0.486441
Target:  5'- -cGGCAUGUCGugGcugacGCCGAUCcuGCGc -3'
miRNA:   3'- caCCGUACGGCugCu----CGGUUAGu-CGU- -5'
18752 5' -55.7 NC_004683.1 + 51861 0.69 0.484374
Target:  5'- uGUGGaCAUGCCGA-GGGCCucgcguuuggCGGCGa -3'
miRNA:   3'- -CACC-GUACGGCUgCUCGGuua-------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 31536 0.69 0.48231
Target:  5'- -cGGCGUcggccacGCCGGCGAGCuCGGuuggguccgacgacUCGGCAa -3'
miRNA:   3'- caCCGUA-------CGGCUGCUCG-GUU--------------AGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.