Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18753 | 3' | -59.6 | NC_004683.1 | + | 4036 | 0.68 | 0.428523 |
Target: 5'- -gUGCGcGCCGccCUCGGgugcgagcaCGGGGUCGAc -3' miRNA: 3'- gaGCGC-CGGCuuGAGCC---------GCCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 27313 | 0.68 | 0.419408 |
Target: 5'- -cCGCaGGaUCGAaucGCUCGGCGGcAUCGAg -3' miRNA: 3'- gaGCG-CC-GGCU---UGAGCCGCCcUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 10753 | 0.68 | 0.418503 |
Target: 5'- -aCGCGG-CGAACgaguucgUCGGCGGGuUCGc -3' miRNA: 3'- gaGCGCCgGCUUG-------AGCCGCCCuAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 23252 | 0.68 | 0.418503 |
Target: 5'- aCUgGUGGCgGggUcgguggaUCGGUGGGGUCa- -3' miRNA: 3'- -GAgCGCCGgCuuG-------AGCCGCCCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 13111 | 0.68 | 0.410411 |
Target: 5'- -aCGCGGCgGcugcccggaggGGCaUCGGCGGGAcCGGu -3' miRNA: 3'- gaGCGCCGgC-----------UUG-AGCCGCCCUaGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 51600 | 0.68 | 0.410411 |
Target: 5'- gUCGCcaGGCCGAGCUCGaCGcGAUCa- -3' miRNA: 3'- gAGCG--CCGGCUUGAGCcGCcCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 27757 | 0.68 | 0.401535 |
Target: 5'- --aGUGGCCGAGCUCG-UGGGcgCa- -3' miRNA: 3'- gagCGCCGGCUUGAGCcGCCCuaGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54461 | 0.68 | 0.392782 |
Target: 5'- gUUGCGGCCGGGCaUGcGuuGGGUCGGg -3' miRNA: 3'- gAGCGCCGGCUUGaGC-CgcCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 44637 | 0.69 | 0.375653 |
Target: 5'- -aCGcCGGCCGAA-UCGGCGaGGAacUUGAa -3' miRNA: 3'- gaGC-GCCGGCUUgAGCCGC-CCU--AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 51680 | 0.69 | 0.375653 |
Target: 5'- aUCGC-GUCGAGCUCGGCcuGGcgacGGUCGAg -3' miRNA: 3'- gAGCGcCGGCUUGAGCCG--CC----CUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 6942 | 0.69 | 0.373127 |
Target: 5'- --gGCGGCCGAcuggCGGCGGGcgguggugcagcucGUCGGc -3' miRNA: 3'- gagCGCCGGCUuga-GCCGCCC--------------UAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 26511 | 0.69 | 0.36728 |
Target: 5'- -cUGCGGCC-AACUCGGCGGcaccggCGGg -3' miRNA: 3'- gaGCGCCGGcUUGAGCCGCCcua---GCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 53690 | 0.69 | 0.350922 |
Target: 5'- aUCGC-GCCGcAGCUCGGCGGcGAagacgCGGc -3' miRNA: 3'- gAGCGcCGGC-UUGAGCCGCC-CUa----GCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 10980 | 0.69 | 0.342148 |
Target: 5'- -aCGCGGCCGGACaggcuuacgccaaUgGGUGGGGccagucgcUCGAg -3' miRNA: 3'- gaGCGCCGGCUUG-------------AgCCGCCCU--------AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54011 | 0.69 | 0.33431 |
Target: 5'- cCUCGuCGGCC-AugUCcuuugccaucucgGGCGGGAUCGc -3' miRNA: 3'- -GAGC-GCCGGcUugAG-------------CCGCCCUAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 24401 | 0.7 | 0.305008 |
Target: 5'- uCUCGCGGgUGAACUCGGCG---UCGc -3' miRNA: 3'- -GAGCGCCgGCUUGAGCCGCccuAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 56828 | 0.7 | 0.297819 |
Target: 5'- gUCGUGGCCGAgaucccaugGCUCGuCGGGcUUGAu -3' miRNA: 3'- gAGCGCCGGCU---------UGAGCcGCCCuAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 23777 | 0.71 | 0.277044 |
Target: 5'- -cCGCGGCgGAACgucgagaacccgUCGGCGcGGAUCu- -3' miRNA: 3'- gaGCGCCGgCUUG------------AGCCGC-CCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 33934 | 0.71 | 0.277044 |
Target: 5'- uUCGCgGGCCGcg-UCGGCuGGAUCGGc -3' miRNA: 3'- gAGCG-CCGGCuugAGCCGcCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 28631 | 0.71 | 0.277044 |
Target: 5'- uUgGCGGCCGAcggccgagACUUGGCGGcGcUCGGc -3' miRNA: 3'- gAgCGCCGGCU--------UGAGCCGCC-CuAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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