miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 3' -60.9 NC_004683.1 + 46780 0.68 0.312452
Target:  5'- -gCUCGUCGCGUcGGUGC-GCCACg- -3'
miRNA:   3'- aaGGGCAGCGCGuUCGCGaCGGUGgc -5'
18756 3' -60.9 NC_004683.1 + 51965 0.68 0.309466
Target:  5'- gUUCCGgcgccacucacggaUCGCGCGguggugcagcucgAGCGCggucgGCCGCCGu -3'
miRNA:   3'- aAGGGC--------------AGCGCGU-------------UCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 26030 0.68 0.305028
Target:  5'- -gCCCGUCGgacaGCccguAGCGCUGCCAg-- -3'
miRNA:   3'- aaGGGCAGCg---CGu---UCGCGACGGUggc -5'
18756 3' -60.9 NC_004683.1 + 41197 0.68 0.29774
Target:  5'- -aCCCGcCGaCGC-GGCGaagGCCGCCGa -3'
miRNA:   3'- aaGGGCaGC-GCGuUCGCga-CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 45013 0.68 0.29774
Target:  5'- gUUUCGaCG-GCAGGCGCUGgCCACUGg -3'
miRNA:   3'- aAGGGCaGCgCGUUCGCGAC-GGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 883 0.68 0.29774
Target:  5'- gUUCCGUgGCGCGGGCaCcgagGCCAUCGc -3'
miRNA:   3'- aAGGGCAgCGCGUUCGcGa---CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 13721 0.68 0.28988
Target:  5'- uUUCgCCGgUGCGCGgccuGCGCUGCCaaacaccGCCGg -3'
miRNA:   3'- -AAG-GGCaGCGCGUu---CGCGACGG-------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 23902 0.69 0.276689
Target:  5'- gUUCCagCGcCGCGUAGGCGUgGCgGCCGa -3'
miRNA:   3'- -AAGG--GCaGCGCGUUCGCGaCGgUGGC- -5'
18756 3' -60.9 NC_004683.1 + 40975 0.69 0.269941
Target:  5'- -aCCUGgccgCGCGCAucGcCGCUGCUACCc -3'
miRNA:   3'- aaGGGCa---GCGCGUu-C-GCGACGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 27209 0.69 0.256202
Target:  5'- --aCUGcCGCGCuGGCGCgucucgaUGCCGCCGa -3'
miRNA:   3'- aagGGCaGCGCGuUCGCG-------ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 44320 0.69 0.250492
Target:  5'- -aCCUGUCacaguCGCAGGCGCUcgcGCUGCCGu -3'
miRNA:   3'- aaGGGCAGc----GCGUUCGCGA---CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 7501 0.69 0.250492
Target:  5'- -gCCCGUCGaUGUGgaauguggcAGCGCgcccgGCCGCCGa -3'
miRNA:   3'- aaGGGCAGC-GCGU---------UCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 56071 0.7 0.220661
Target:  5'- --aCCGcCGCGUcuGGCGCUGgCACCGc -3'
miRNA:   3'- aagGGCaGCGCGu-UCGCGACgGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 13527 0.7 0.215071
Target:  5'- -cCCUG-CGCGgGGaacGCGCUGCCACCc -3'
miRNA:   3'- aaGGGCaGCGCgUU---CGCGACGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 40871 0.7 0.212869
Target:  5'- cUCgCCGUCG-GCGAGCGCgucggucgcggcgGUCACCGc -3'
miRNA:   3'- aAG-GGCAGCgCGUUCGCGa------------CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 5028 0.71 0.193914
Target:  5'- -cCUCGaCGCGCAuGCGCcgcugGCCGCCGc -3'
miRNA:   3'- aaGGGCaGCGCGUuCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 10305 0.72 0.1656
Target:  5'- aUUCCCGUUGaaccgacgcuCGaCGAGCGUucUGCCACCGc -3'
miRNA:   3'- -AAGGGCAGC----------GC-GUUCGCG--ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 44426 0.72 0.152881
Target:  5'- --gUCGUCGCGCGcacaacgcgcgcAGCGC-GCCACCGc -3'
miRNA:   3'- aagGGCAGCGCGU------------UCGCGaCGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 18079 0.73 0.139919
Target:  5'- -aCCCGUCGCcgucggcguucaccGCAgggauGGCGcCUGCCACUGg -3'
miRNA:   3'- aaGGGCAGCG--------------CGU-----UCGC-GACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 44047 0.73 0.133642
Target:  5'- aUCCgGgaggCGCGCGGGUGCUGCCAg-- -3'
miRNA:   3'- aAGGgCa---GCGCGUUCGCGACGGUggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.