Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18757 | 5' | -51.7 | NC_004683.1 | + | 2743 | 1.11 | 0.002064 |
Target: 5'- aACGAUCGUCCAGUACGAGUUACCGGCc -3' miRNA: 3'- -UGCUAGCAGGUCAUGCUCAAUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 54691 | 0.75 | 0.436099 |
Target: 5'- gGCGAUCGUCCGGUcgGCGAcGUcgcgccgauUACgGGUg -3' miRNA: 3'- -UGCUAGCAGGUCA--UGCU-CA---------AUGgCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 447 | 0.75 | 0.464945 |
Target: 5'- gGCGGUCGaggcggaUCCGGUggACGAGUUGaaGGCc -3' miRNA: 3'- -UGCUAGC-------AGGUCA--UGCUCAAUggCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 22164 | 0.72 | 0.604096 |
Target: 5'- cCGAUaCGugguacccgaauaUCCAGUACGGGUUGCgCGGg -3' miRNA: 3'- uGCUA-GC-------------AGGUCAUGCUCAAUG-GCCg -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 4714 | 0.72 | 0.616311 |
Target: 5'- cCGAUgGcacgcaggCCGGUGCGAGggugcACCGGCa -3' miRNA: 3'- uGCUAgCa-------GGUCAUGCUCaa---UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 49722 | 0.71 | 0.638556 |
Target: 5'- aGCGAUCGUgCAcgaagGCGAGUUGCCcgaagGGUg -3' miRNA: 3'- -UGCUAGCAgGUca---UGCUCAAUGG-----CCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 5067 | 0.71 | 0.671852 |
Target: 5'- cGCGGUCGUagucgccaCGGccgcccUGCGAGgaACCGGCc -3' miRNA: 3'- -UGCUAGCAg-------GUC------AUGCUCaaUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 55953 | 0.71 | 0.682888 |
Target: 5'- gACGcgCGgCCcGUagACGAGUUgGCCGGCg -3' miRNA: 3'- -UGCuaGCaGGuCA--UGCUCAA-UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 42600 | 0.7 | 0.715656 |
Target: 5'- cCGGUCGUCCGGcugGGGUggUCGGCg -3' miRNA: 3'- uGCUAGCAGGUCaugCUCAauGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 32627 | 0.7 | 0.747665 |
Target: 5'- cGCGAUCGagaaCCGGUgggcACGGGUgcucaaggcgGCCGGUc -3' miRNA: 3'- -UGCUAGCa---GGUCA----UGCUCAa---------UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 8580 | 0.69 | 0.757071 |
Target: 5'- gACGGUCGUguagccaCCAGccGCGGGagucgUGCCGGUc -3' miRNA: 3'- -UGCUAGCA-------GGUCa-UGCUCa----AUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 1524 | 0.69 | 0.778595 |
Target: 5'- gGCGAUCGgcguggCCGGguaucGCGAGga--CGGCa -3' miRNA: 3'- -UGCUAGCa-----GGUCa----UGCUCaaugGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 40721 | 0.69 | 0.778595 |
Target: 5'- aAUGAccUCGUUCAGUGCGcGGUUGa-GGCg -3' miRNA: 3'- -UGCU--AGCAGGUCAUGC-UCAAUggCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 12935 | 0.68 | 0.807173 |
Target: 5'- gGCGAU--UCCGGUcuGCGAGUagcggccUGCCGGg -3' miRNA: 3'- -UGCUAgcAGGUCA--UGCUCA-------AUGGCCg -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 21698 | 0.68 | 0.808132 |
Target: 5'- -gGGUgGU-CGGUGCGGGUggcGCUGGCa -3' miRNA: 3'- ugCUAgCAgGUCAUGCUCAa--UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 18263 | 0.68 | 0.808132 |
Target: 5'- gGCGAU-GUCCGGcgACGA---GCCGGUg -3' miRNA: 3'- -UGCUAgCAGGUCa-UGCUcaaUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 46721 | 0.67 | 0.853458 |
Target: 5'- -gGGUCGUCaUGGUGCGGGU---CGGCu -3' miRNA: 3'- ugCUAGCAG-GUCAUGCUCAaugGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 4218 | 0.67 | 0.853458 |
Target: 5'- -aGAUCGggCCGGUgACGug--GCCGGCc -3' miRNA: 3'- ugCUAGCa-GGUCA-UGCucaaUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 24413 | 0.67 | 0.861848 |
Target: 5'- gGCGAUCGUCgGcuacgGCGGGaccaagccGCCGGCc -3' miRNA: 3'- -UGCUAGCAGgUca---UGCUCaa------UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 13598 | 0.67 | 0.861848 |
Target: 5'- cGCGAUCGgCUA-UGCGGGccagcucGCCGGCa -3' miRNA: 3'- -UGCUAGCaGGUcAUGCUCaa-----UGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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