miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 5' -51.7 NC_004683.1 + 447 0.75 0.464945
Target:  5'- gGCGGUCGaggcggaUCCGGUggACGAGUUGaaGGCc -3'
miRNA:   3'- -UGCUAGC-------AGGUCA--UGCUCAAUggCCG- -5'
18757 5' -51.7 NC_004683.1 + 39532 0.66 0.918403
Target:  5'- gGCGAcuaccuguaucgCGUCCGGguUACcAGUUACCcGGCu -3'
miRNA:   3'- -UGCUa-----------GCAGGUC--AUGcUCAAUGG-CCG- -5'
18757 5' -51.7 NC_004683.1 + 38293 0.66 0.913367
Target:  5'- aACGGagGUCCAGU-CaAGU--CCGGCa -3'
miRNA:   3'- -UGCUagCAGGUCAuGcUCAauGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 25100 0.66 0.899993
Target:  5'- gGCGGUCuggCCAacccgGCGGcGUUGCCGGUc -3'
miRNA:   3'- -UGCUAGca-GGUca---UGCU-CAAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 46398 0.66 0.892893
Target:  5'- uACcg-CGcCCAGUACGuG-UACCGGUg -3'
miRNA:   3'- -UGcuaGCaGGUCAUGCuCaAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 11034 0.67 0.884771
Target:  5'- uGCGGUCccugcaguucgguGUCCAGU-CGGGgcucAUCGGCc -3'
miRNA:   3'- -UGCUAG-------------CAGGUCAuGCUCaa--UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 7032 0.67 0.877888
Target:  5'- gACGAU-GUCgAGUACGAGUgguucgagACC-GCg -3'
miRNA:   3'- -UGCUAgCAGgUCAUGCUCAa-------UGGcCG- -5'
18757 5' -51.7 NC_004683.1 + 44102 0.67 0.869994
Target:  5'- cGCGAUCGUCgAGgug-----ACCGGCg -3'
miRNA:   3'- -UGCUAGCAGgUCaugcucaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 41383 0.67 0.869994
Target:  5'- cACGAUCGaCgAGUACccGUcgGCUGGCg -3'
miRNA:   3'- -UGCUAGCaGgUCAUGcuCAa-UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 24413 0.67 0.861848
Target:  5'- gGCGAUCGUCgGcuacgGCGGGaccaagccGCCGGCc -3'
miRNA:   3'- -UGCUAGCAGgUca---UGCUCaa------UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 22164 0.72 0.604096
Target:  5'- cCGAUaCGugguacccgaauaUCCAGUACGGGUUGCgCGGg -3'
miRNA:   3'- uGCUA-GC-------------AGGUCAUGCUCAAUG-GCCg -5'
18757 5' -51.7 NC_004683.1 + 49722 0.71 0.638556
Target:  5'- aGCGAUCGUgCAcgaagGCGAGUUGCCcgaagGGUg -3'
miRNA:   3'- -UGCUAGCAgGUca---UGCUCAAUGG-----CCG- -5'
18757 5' -51.7 NC_004683.1 + 42600 0.7 0.715656
Target:  5'- cCGGUCGUCCGGcugGGGUggUCGGCg -3'
miRNA:   3'- uGCUAGCAGGUCaugCUCAauGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 1524 0.69 0.778595
Target:  5'- gGCGAUCGgcguggCCGGguaucGCGAGga--CGGCa -3'
miRNA:   3'- -UGCUAGCa-----GGUCa----UGCUCaaugGCCG- -5'
18757 5' -51.7 NC_004683.1 + 21698 0.68 0.808132
Target:  5'- -gGGUgGU-CGGUGCGGGUggcGCUGGCa -3'
miRNA:   3'- ugCUAgCAgGUCAUGCUCAa--UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 4218 0.67 0.853458
Target:  5'- -aGAUCGggCCGGUgACGug--GCCGGCc -3'
miRNA:   3'- ugCUAGCa-GGUCA-UGCucaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 13598 0.67 0.861848
Target:  5'- cGCGAUCGgCUA-UGCGGGccagcucGCCGGCa -3'
miRNA:   3'- -UGCUAGCaGGUcAUGCUCaa-----UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 24948 0.66 0.919635
Target:  5'- cCGGUCuuGUCCuuggACGGGUUGCCGa- -3'
miRNA:   3'- uGCUAG--CAGGuca-UGCUCAAUGGCcg -5'
18757 5' -51.7 NC_004683.1 + 54691 0.75 0.436099
Target:  5'- gGCGAUCGUCCGGUcgGCGAcGUcgcgccgauUACgGGUg -3'
miRNA:   3'- -UGCUAGCAGGUCA--UGCU-CA---------AUGgCCG- -5'
18757 5' -51.7 NC_004683.1 + 4714 0.72 0.616311
Target:  5'- cCGAUgGcacgcaggCCGGUGCGAGggugcACCGGCa -3'
miRNA:   3'- uGCUAgCa-------GGUCAUGCUCaa---UGGCCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.