Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18757 | 5' | -51.7 | NC_004683.1 | + | 447 | 0.75 | 0.464945 |
Target: 5'- gGCGGUCGaggcggaUCCGGUggACGAGUUGaaGGCc -3' miRNA: 3'- -UGCUAGC-------AGGUCA--UGCUCAAUggCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 39532 | 0.66 | 0.918403 |
Target: 5'- gGCGAcuaccuguaucgCGUCCGGguUACcAGUUACCcGGCu -3' miRNA: 3'- -UGCUa-----------GCAGGUC--AUGcUCAAUGG-CCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 38293 | 0.66 | 0.913367 |
Target: 5'- aACGGagGUCCAGU-CaAGU--CCGGCa -3' miRNA: 3'- -UGCUagCAGGUCAuGcUCAauGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 25100 | 0.66 | 0.899993 |
Target: 5'- gGCGGUCuggCCAacccgGCGGcGUUGCCGGUc -3' miRNA: 3'- -UGCUAGca-GGUca---UGCU-CAAUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 46398 | 0.66 | 0.892893 |
Target: 5'- uACcg-CGcCCAGUACGuG-UACCGGUg -3' miRNA: 3'- -UGcuaGCaGGUCAUGCuCaAUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 11034 | 0.67 | 0.884771 |
Target: 5'- uGCGGUCccugcaguucgguGUCCAGU-CGGGgcucAUCGGCc -3' miRNA: 3'- -UGCUAG-------------CAGGUCAuGCUCaa--UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 7032 | 0.67 | 0.877888 |
Target: 5'- gACGAU-GUCgAGUACGAGUgguucgagACC-GCg -3' miRNA: 3'- -UGCUAgCAGgUCAUGCUCAa-------UGGcCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 44102 | 0.67 | 0.869994 |
Target: 5'- cGCGAUCGUCgAGgug-----ACCGGCg -3' miRNA: 3'- -UGCUAGCAGgUCaugcucaaUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 41383 | 0.67 | 0.869994 |
Target: 5'- cACGAUCGaCgAGUACccGUcgGCUGGCg -3' miRNA: 3'- -UGCUAGCaGgUCAUGcuCAa-UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 24413 | 0.67 | 0.861848 |
Target: 5'- gGCGAUCGUCgGcuacgGCGGGaccaagccGCCGGCc -3' miRNA: 3'- -UGCUAGCAGgUca---UGCUCaa------UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 22164 | 0.72 | 0.604096 |
Target: 5'- cCGAUaCGugguacccgaauaUCCAGUACGGGUUGCgCGGg -3' miRNA: 3'- uGCUA-GC-------------AGGUCAUGCUCAAUG-GCCg -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 49722 | 0.71 | 0.638556 |
Target: 5'- aGCGAUCGUgCAcgaagGCGAGUUGCCcgaagGGUg -3' miRNA: 3'- -UGCUAGCAgGUca---UGCUCAAUGG-----CCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 42600 | 0.7 | 0.715656 |
Target: 5'- cCGGUCGUCCGGcugGGGUggUCGGCg -3' miRNA: 3'- uGCUAGCAGGUCaugCUCAauGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 1524 | 0.69 | 0.778595 |
Target: 5'- gGCGAUCGgcguggCCGGguaucGCGAGga--CGGCa -3' miRNA: 3'- -UGCUAGCa-----GGUCa----UGCUCaaugGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 21698 | 0.68 | 0.808132 |
Target: 5'- -gGGUgGU-CGGUGCGGGUggcGCUGGCa -3' miRNA: 3'- ugCUAgCAgGUCAUGCUCAa--UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 4218 | 0.67 | 0.853458 |
Target: 5'- -aGAUCGggCCGGUgACGug--GCCGGCc -3' miRNA: 3'- ugCUAGCa-GGUCA-UGCucaaUGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 13598 | 0.67 | 0.861848 |
Target: 5'- cGCGAUCGgCUA-UGCGGGccagcucGCCGGCa -3' miRNA: 3'- -UGCUAGCaGGUcAUGCUCaa-----UGGCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 24948 | 0.66 | 0.919635 |
Target: 5'- cCGGUCuuGUCCuuggACGGGUUGCCGa- -3' miRNA: 3'- uGCUAG--CAGGuca-UGCUCAAUGGCcg -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 54691 | 0.75 | 0.436099 |
Target: 5'- gGCGAUCGUCCGGUcgGCGAcGUcgcgccgauUACgGGUg -3' miRNA: 3'- -UGCUAGCAGGUCA--UGCU-CA---------AUGgCCG- -5' |
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18757 | 5' | -51.7 | NC_004683.1 | + | 4714 | 0.72 | 0.616311 |
Target: 5'- cCGAUgGcacgcaggCCGGUGCGAGggugcACCGGCa -3' miRNA: 3'- uGCUAgCa-------GGUCAUGCUCaa---UGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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